View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9646_low_3 (Length: 373)
Name: NF9646_low_3
Description: NF9646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9646_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 42 - 355
Target Start/End: Original strand, 35304165 - 35304478
Alignment:
| Q |
42 |
ttcactttgatctgctttctcccccattctaattttaaatttacatctagttcattttctaatttaattgtgaagatgggacattacactatgtttctag |
141 |
Q |
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| T |
35304165 |
ttcactttgatctgctttctcccccattctaattttaaatttacatctagttcattttctaatttaattgtgaagatgggacattacactatgtttctag |
35304264 |
T |
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| Q |
142 |
tcaattgttgtgtgctctgttgattatatctactttatttagacacataaatgtagtgttggttcaattttgaagtgaaaaaagtgtagtttagcgttca |
241 |
Q |
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| T |
35304265 |
tcaattgttgtgtgctctgttgattatatctattttatttagacacataaatgtagtgttggttcaattttgaagtgaaaaaggtgaagtttagcgttca |
35304364 |
T |
|
| Q |
242 |
tgtgtcattgggggtcacacacaatagtcaataagaaatctagcaatatcttggggtagttgtaccataaagttattgaatctatgagggtgatttctta |
341 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35304365 |
tgtgtcattgggggtcacacacaatagtcaataaaaaatctagcaatatcttggggtagttgtagcataaagttattgaatctatgagggtgatttctta |
35304464 |
T |
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| Q |
342 |
atctacagttcttg |
355 |
Q |
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|||||||||||||| |
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| T |
35304465 |
atctacagttcttg |
35304478 |
T |
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