View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9646_low_4 (Length: 260)

Name: NF9646_low_4
Description: NF9646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9646_low_4
NF9646_low_4
[»] chr8 (1 HSPs)
chr8 (19-249)||(28430723-28430953)
[»] chr5 (10 HSPs)
chr5 (23-165)||(13373003-13373145)
chr5 (23-141)||(13378823-13378941)
chr5 (19-167)||(13426150-13426298)
chr5 (19-105)||(13412976-13413062)
chr5 (20-105)||(13385520-13385605)
chr5 (20-105)||(13389341-13389426)
chr5 (19-63)||(13446914-13446958)
chr5 (19-129)||(13419297-13419407)
chr5 (19-166)||(13393747-13393894)
chr5 (19-63)||(13453867-13453911)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 28430723 - 28430953
Alignment:
Q  19 acttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28430723 acttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttctt 28430822  T
Q  119 ggagctgactcatttgttgttagcagtgaacaagatcaaatgcaggtatgtatctactatattagagtaattatgatcaatttttgaattctttttaggc 218  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28430823 ggagctgactcatttgtggttagcagtgaacaagatcaaatgcaggtatgtatctactatattagagtaattatgatcaatttttcaattctttttaggc 28430922  T
Q  219 ttaattatcctattctcatagaaacggacct 249  Q
    |||||||||||||||||||||||||||||||    
T  28430923 ttaattatcctattctcatagaaacggacct 28430953  T

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Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 13373145 - 13373003
Alignment:
Q  23 ggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggag 122  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||   | ||||    
T  13373145 ggtcatatggctgtgaaatttaccaaagcttttggtgctaatgtaacagtgataagcacttctcctaacaaaaagaaggaagccattgaacacttaggag 13373046  T
Q  123 ctgactcatttgttgttagcagtgaacaagatcaaatgcaggt 165  Q
    ||||||||||||| ||||||   |||||||| |||||||||||    
T  13373045 ctgactcatttgtggttagccacgaacaagaccaaatgcaggt 13373003  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 13378941 - 13378823
Alignment:
Q  23 ggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttcttggag 122  Q
    ||||||||||||||||| || |||||||| ||||||| ||||||||| ||| | || |||||||||||||||||||||||||| |||||||   | ||||    
T  13378941 ggtcatatggctgtgaagttcgccaaagcctttggtgttaaggtaactgtggtaagtacttctcctaacaaaaagaaggaagccattgaacgcttaggag 13378842  T
Q  123 ctgactcatttgttgttag 141  Q
    |||||||||| || |||||    
T  13378841 ctgactcattcgtggttag 13378823  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 13426298 - 13426150
Alignment:
Q  19 acttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttctt 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || || |||| |||| | |||||||| || |||| | |     
T  13426298 acttggtcatatggctgtgaaattcgccaaagcttttggtgctaatgtaacagtaattagtacatcgcctagcaaagaaaaggaagcgatagaacattta 13426199  T
Q  119 ggagctgactcatttgttgttagcagtgaacaagatcaaatgcaggtat 167  Q
    ||||||||||| ||| | || ||| | || | |||||| ||||||||||    
T  13426198 ggagctgactcgtttctagtaagccgcgatccagatcagatgcaggtat 13426150  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 13413062 - 13412976
Alignment:
Q  19 acttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagc 105  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| || || || ||||| || || ||||||||| | ||||||||    
T  13413062 acttggccatatggctgtgaaatttgccaaagctttcggtgctaatgttaccgtaattagtacatcgcctaacaaagaaaaggaagc 13412976  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 13385520 - 13385605
Alignment:
Q  20 cttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagc 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || || || ||||| || ||| ||| |||| | ||||||||    
T  13385520 cttggtcacatggctgtgaaatttgccaaagcttttggtgctaatgtgaccgtaattagtacatctgctagcaaagaaaaggaagc 13385605  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 13389341 - 13389426
Alignment:
Q  20 cttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagc 105  Q
    |||||||| ||||||||||||||||||||||| |||||||| |  |||||||||||||| || || || |||||| |||| |||||    
T  13389341 cttggtcacatggctgtgaaatttgccaaagcatttggtgcgattgtaacagtgattagtacatcacccaacaaagagaaagaagc 13389426  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 13446958 - 13446914
Alignment:
Q  19 acttggtcatatggctgtgaaatttgccaaagcttttggtgctaa 63  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  13446958 acttggtcatatggctgtgaaatttgctaaagcttttggtgctaa 13446914  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 13419407 - 13419297
Alignment:
Q  19 acttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttctt 118  Q
    |||||| |||||||||||||||||||| |||||||| |||||||| || || || ||||| || || ||| ||||| | |||||||| || ||||   |     
T  13419407 acttggccatatggctgtgaaatttgcaaaagctttcggtgctaatgtgaccgtaattagtacatcgcctcacaaagaaaaggaagcaatagaacacttg 13419308  T
Q  119 ggagctgactc 129  Q
    |||||||||||    
T  13419307 ggagctgactc 13419297  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 13393747 - 13393894
Alignment:
Q  19 acttggtcatatggctgtgaaatttgccaaagcttttggtgctaaggtaacagtgattagcacttctcctaacaaaaagaaggaagctattgaacttctt 118  Q
    |||||||||  ||| |||||| ||||| ||||||||||| ||||| |||||||| ||||| || || || |||||| |||| ||||| || |||   ||     
T  13393747 acttggtcacttgggtgtgaagtttgcaaaagcttttggagctaatgtaacagtaattagtacatcacccaacaaagagaaagaagcaatagaaaaccta 13393846  T
Q  119 ggagctgactcatttgttgttagcagtgaacaagatcaaatgcaggta 166  Q
    |||||||| |||||| || | ||   ||| |||||| |||||||||||    
T  13393847 ggagctgattcatttcttataagtcatgaccaagataaaatgcaggta 13393894  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 13453911 - 13453867
Alignment:
Q  19 acttggtcatatggctgtgaaatttgccaaagcttttggtgctaa 63  Q
    |||||| |||||||| |||||||| ||||||||||| ||||||||    
T  13453911 acttggccatatggccgtgaaattcgccaaagctttcggtgctaa 13453867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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