View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9646_low_7 (Length: 213)
Name: NF9646_low_7
Description: NF9646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9646_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 50766104 - 50766309
Alignment:
| Q |
1 |
tattatttacaccgttaaatttccattcacataaattgatacattatcccatgatacaaatccaacctctcaaaccnnnnnnnnn--gagatcgatgccc |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50766104 |
tattatttacaccgttaaatttccattcacataaattgatacattatcccatgatacaaatccaacctctcaaaccaaaaaaaaaaagagatcgatgccc |
50766203 |
T |
|
| Q |
99 |
aataatctctcataatccagcatcgaataaatatattttacaaaaaattgaataatatgtctctttaatggataagaacccgtatattttccttcctttg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
50766204 |
aataatctctcataatccagcatcgaataaatatattttacaaaaaattgaataatatgtctctttaatggataagaacccatatattttccttcctttg |
50766303 |
T |
|
| Q |
199 |
tctctg |
204 |
Q |
| |
|
|||||| |
|
|
| T |
50766304 |
tctctg |
50766309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 29996707 - 29996632
Alignment:
| Q |
127 |
aaatatattttacaaaaaattgaataatatgtctctttaatggataagaacccgtatattttccttcctttgtctc |
202 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||| | |||| |||||| |||| | ||||| ||||||| |||||||| |
|
|
| T |
29996707 |
aaatatatattataaaaaattgaataatttgtatatttattggatatgaactcatatatcttccttcatttgtctc |
29996632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University