View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9647_high_2 (Length: 272)
Name: NF9647_high_2
Description: NF9647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9647_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 3 - 272
Target Start/End: Original strand, 54601370 - 54601639
Alignment:
| Q |
3 |
agcggaaacaagttgtcggtgttcggaggtggtagggtttagggtttcgatgttaaaatcattggaaaagcctttgaatggttttttaacaggtatgaat |
102 |
Q |
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| T |
54601370 |
agcggaaacaagttgtcggtgttcggaggtggtagggtttagggtttcgatgttaaaatcattggaaaagcctttgaatggttttttaacaggtatgaat |
54601469 |
T |
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| Q |
103 |
tcgatttttctctgaaatggatcgtgttgtttggtaatagtttcggtttcaaccattaaagtttctgccattgttattgattgaattgaagcttcttcga |
202 |
Q |
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| T |
54601470 |
tcgatttttctctgaaatggatcgtgttgtttggtaatagtttcggtttcaaccattaaagtttctgccattgttattgattgaattgaagcttcttcga |
54601569 |
T |
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| Q |
203 |
tttgagaattgaaaatggaatgtgtaaagagaatgaataatagagcatagatgaacagaacaaaacagaa |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54601570 |
tttgagaattgaaaatggaatgtgtaaagagaatgaataatagagcatagatgaacagaacaaaacagaa |
54601639 |
T |
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