View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9647_high_4 (Length: 205)

Name: NF9647_high_4
Description: NF9647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9647_high_4
NF9647_high_4
[»] chr3 (20 HSPs)
chr3 (13-187)||(5298871-5299045)
chr3 (14-181)||(5250315-5250482)
chr3 (13-182)||(5268201-5268370)
chr3 (20-162)||(8589894-8590036)
chr3 (20-181)||(4388659-4388826)
chr3 (27-162)||(6736155-6736290)
chr3 (27-162)||(6947434-6947569)
chr3 (20-162)||(6448504-6448646)
chr3 (40-172)||(8568690-8568822)
chr3 (27-162)||(6554167-6554302)
chr3 (27-162)||(6479711-6479846)
chr3 (30-157)||(8454824-8454951)
chr3 (69-172)||(5280836-5280939)
chr3 (30-162)||(8471726-8471858)
chr3 (90-161)||(6519954-6520025)
chr3 (72-170)||(6591105-6591203)
chr3 (81-171)||(6721852-6721942)
chr3 (110-171)||(6882685-6882746)
chr3 (30-145)||(6838633-6838748)
chr3 (120-164)||(6142474-6142518)
[»] scaffold0425 (1 HSPs)
scaffold0425 (27-162)||(7206-7341)
[»] chr7 (1 HSPs)
chr7 (38-151)||(6573038-6573151)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 5299045 - 5298871
Alignment:
Q  13 agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299045 agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg 5298946  T
Q  113 atctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaacttct 187  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  5298945 atctaccggaagtaagattattgtgaccacacgtgacaaggaggtagcatcagttatgaagtccaccaaacttct 5298871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 5250482 - 5250315
Alignment:
Q  14 gcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgga 113  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||   | |||||    
T  5250482 gcagagactaacaggtaagaaatatcttcttgttttggatgatgtctggaatgggagtgtggaatgttgggagcgcttactacttcccttatgccatgga 5250383  T
Q  114 tctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaa 181  Q
    ||||| |||||||| |||||||| ||||||||| |||||||||| |||||  ||||||||||||||||    
T  5250382 tctactggaagtaaaattattgttacaacacgtaacaaggaggtggcatctatcatgaagtccaccaa 5250315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 5268370 - 5268201
Alignment:
Q  13 agcagagactaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatgg 112  Q
    ||||| |||||||||| ||||||||  ||||| ||||||||||||||||||| || ||||  |||||||||||||||||| ||||||| ||   | ||||    
T  5268370 agcagggactaacaggcaagaaatacttgctttttttggatgatgtctggaatgggagtgaagaatgttgggagcgcttattacttcccttattccatgg 5268271  T
Q  113 atctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaaa 182  Q
    |||| | |||||||| |||||||||||||||||| ||| | |||||||| | |||||||| |||||||||    
T  5268270 atctgctggaagtaaaattattgtgacaacacgtaacatgaaggtagcaactgtcatgaactccaccaaa 5268201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 8590036 - 8589894
Alignment:
Q  20 actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc 119  Q
    ||||||||| ||||||||  |||||||||| || ||| |||||||||| | ||| |||||||||||||  ||||||||||| |||||| |||||| | |     
T  8590036 actaacaggcaagaaatacttgcttgttttagacgatatctggaacgggaatgcagaatgttgggagcagttactacttccctttaaccatggattttct 8589937  T
Q  120 ggaagtaagattattgtgacaacacgtgacaaggaggtagcat 162  Q
    |||||||||||| | |||||||||||||| |||||||||||||    
T  8589936 ggaagtaagattgtcgtgacaacacgtgaaaaggaggtagcat 8589894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 4388659 - 4388826
Alignment:
Q  20 actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc 119  Q
    |||||| || ||||||||| |||||||||| |||||||||||||| || | || |||| ||||||||||||||||||||||  |   | ||||||||||     
T  4388659 actaactggtaagaaatatttgcttgttttagatgatgtctggaatgggaatgaggaaggttgggagcgcttactacttcccctatgccatggatctact 4388758  T
Q  120 ggaagt------aagattattgtgacaacacgtgacaaggaggtagcatcagtcatgaagtccaccaa 181  Q
    ||||||      || |||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  4388759 ggaagtggaagtaaaattattgtgacaactcgtgacaaggaggtagcatctatcatgaagtccaccaa 4388826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 6736290 - 6736155
Alignment:
Q  27 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 126  Q
    |||||||||||  |||||||||| |||||| ||||||| || ||||  |||| ||||||||   |||||||||| |||||| |||||||| | |||||||    
T  6736290 ggaaagaaatacttgcttgttttagatgatatctggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta 6736191  T
Q  127 agattattgtgacaacacgtgacaaggaggtagcat 162  Q
    | ||||| |||||||||||||| |||||||||||||    
T  6736190 aaattatcgtgacaacacgtgaaaaggaggtagcat 6736155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 6947569 - 6947434
Alignment:
Q  27 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 126  Q
    |||||||||||  |||||||||| |||||| ||||||||||   ||| |||||||||||||  ||||| ||||| |||||| |||||||| | |||||||    
T  6947569 ggaaagaaatacttgcttgttttagatgatatctggaacggggatgcagaatgttgggagctgttacttcttccctttaaccatggatcttctggaagta 6947470  T
Q  127 agattattgtgacaacacgtgacaaggaggtagcat 162  Q
    ||||||| |||||||| ||||| ||||||| |||||    
T  6947469 agattatcgtgacaactcgtgaaaaggaggcagcat 6947434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 6448504 - 6448646
Alignment:
Q  20 actaacaggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctacc 119  Q
    ||||||| ||||||||||  | |||||||| || ||  |||||||||| | ||| ||| |||||||||   |||| ||||| |||||| |||||||| |     
T  6448504 actaacaagaaagaaatactttcttgttttagacgacatctggaacgggaatgcagaacgttgggagcaggtactgcttccgtttaaccatggatcttct 6448603  T
Q  120 ggaagtaagattattgtgacaacacgtgacaaggaggtagcat 162  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  6448604 ggaagtaagattattgtgacaacacgtgaaaaggaggtagcat 6448646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 8568690 - 8568822
Alignment:
Q  40 tgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgac 139  Q
    |||||||| | |||||| ||||||| || | || ||||| ||||||||  ||||||||||| |||||  |||||||| | ||||||||||||||||||||    
T  8568690 tgcttgttctagatgatatctggaatgggaatgaggaattttgggagcagttactacttccatttaatcatggatcttcaggaagtaagattattgtgac 8568789  T
Q  140 aacacgtgacaaggaggtagcatcagtcatgaa 172  Q
    ||||||||||||| | || |||| |||||||||    
T  8568790 aacacgtgacaagcatgttgcattagtcatgaa 8568822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 6554167 - 6554302
Alignment:
Q  27 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 126  Q
    |||||||||||  |||||||||| |||||| | ||||| || ||||  |||| ||||||||   |||||||||| |||||| |||||||| | |||||||    
T  6554167 ggaaagaaatacttgcttgttttagatgatatatggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta 6554266  T
Q  127 agattattgtgacaacacgtgacaaggaggtagcat 162  Q
     |||||| |||||||||||||| |||||||||||||    
T  6554267 tgattatcgtgacaacacgtgaaaaggaggtagcat 6554302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 6479711 - 6479846
Alignment:
Q  27 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 126  Q
    |||||||||||  |||||||||| |||||| ||||||| || | ||  || | ||||||||  ||||||||||| |||||| ||||||||   |||||||    
T  6479711 ggaaagaaatacttgcttgttttagatgatatctggaatgggaatgtagagtattgggagcagttactacttccatttaaccatggatcttttggaagta 6479810  T
Q  127 agattattgtgacaacacgtgacaaggaggtagcat 162  Q
    ||||||| |||||||||||||| |||||||| ||||    
T  6479811 agattatcgtgacaacacgtgaaaaggaggtggcat 6479846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 8454951 - 8454824
Alignment:
Q  30 aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga 129  Q
    ||||||||| |||||||||| || ||| ||||||||||   ||||||| ||||||||   ||||||||||| |||||| ||||||||   ||||||||||    
T  8454951 aagaaatatttgcttgttttagacgatatctggaacggggatgcggaacgttgggagttgttactacttccctttaaccatggatcttttggaagtaaga 8454852  T
Q  130 ttattgtgacaacacgtgacaaggaggt 157  Q
    || | |||||||||||||| ||||||||    
T  8454851 ttgtcgtgacaacacgtgagaaggaggt 8454824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 5280939 - 5280836
Alignment:
Q  69 agtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtca 168  Q
    |||| |||||||||||| |  ||||||||||| |||||  ||||||||   |||||||||||||||||||| ||||||||||| ||||||||| |||| |    
T  5280939 agtggggaatgttgggaacagttactacttccctttaatcatggatcttttggaagtaagattattgtgaccacacgtgacaaagaggtagcagcagtaa 5280840  T
Q  169 tgaa 172  Q
    ||||    
T  5280839 tgaa 5280836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 8471858 - 8471726
Alignment:
Q  30 aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga 129  Q
    ||||| ||||| |||||| ||||||||||||||||    | || |||| ||||||||   ||||||||||| |||||| |||||||| |    |||||||    
T  8471858 aagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagaagttactacttccctttaaccatggatcttctacgagtaaga 8471759  T
Q  130 ttattgtgacaacacgtgacaaggaggtagcat 162  Q
    |||||||||||||||| ||||| ||||||||||    
T  8471758 ttattgtgacaacacgcgacaaagaggtagcat 8471726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 6519954 - 6520025
Alignment:
Q  90 ttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagca 161  Q
    |||||||||||  ||||| |||||||| | |||||||||||||| |||||||||||||| ||| ||||||||    
T  6519954 ttactacttccgcttaaccatggatcttctggaagtaagattatcgtgacaacacgtgaaaagaaggtagca 6520025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 6591105 - 6591203
Alignment:
Q  72 gcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatg 170  Q
    |||||||||||||||    |||||||||| |||| | |||||||| | ||||||||||| || |||||||| | ||||||||| ||||||||| |||||    
T  6591105 gcggaatgttgggagatgctactacttccgtttagccatggatcttctggaagtaagatgatggtgacaacgcatgacaaggaagtagcatcaatcatg 6591203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 6721852 - 6721942
Alignment:
Q  81 tgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatga 171  Q
    |||||||  |||||||||| ||||||   ||||||| | ||||||||||| || ||||||||||| |||||||| ||||||||| ||||||    
T  6721852 tgggagcagttactacttctttttaaatgtggatcttcaggaagtaagatgatcgtgacaacacgggacaaggaagtagcatcaatcatga 6721942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 6882746 - 6882685
Alignment:
Q  110 tggatctaccggaagtaagattattgtgacaacacgtgacaaggaggtagcatcagtcatga 171  Q
    ||||||| | ||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||    
T  6882746 tggatcttcaggaagtaagatgattgtgacaacacatgacaaggaagtagcatcaatcatga 6882685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 6838633 - 6838748
Alignment:
Q  30 aagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaaga 129  Q
    ||||| ||||| |||||| ||||||||||||||||    | || |||| ||||||||   |||||||||||||||||| | |||||| |    |||||||    
T  6838633 aagaactatctacttgttgtggatgatgtctggaaactgaatgaggaaagttgggagacgttactacttccttttaaccaaggatcttctacgagtaaga 6838732  T
Q  130 ttattgtgacaacacg 145  Q
    ||||||||||||||||    
T  6838733 ttattgtgacaacacg 6838748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 6142518 - 6142474
Alignment:
Q  120 ggaagtaagattattgtgacaacacgtgacaaggaggtagcatca 164  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  6142518 ggaagtaagatgattgtgacaacacatgacaaggaagtagcatca 6142474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 7206 - 7341
Alignment:
Q  27 ggaaagaaatatctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagta 126  Q
    |||||||||||  |||||||||| |||||| | ||||| || ||||  |||| ||||||||   |||||||||| |||||| |||||||| | |||||||    
T  7206 ggaaagaaatacttgcttgttttagatgatatatggaatgggagtgtagaatattgggagcagctactacttccgtttaaccatggatcttctggaagta 7305  T
Q  127 agattattgtgacaacacgtgacaaggaggtagcat 162  Q
    | ||||| |||||||||||||| |||||||||||||    
T  7306 aaattatcgtgacaacacgtgaaaaggaggtagcat 7341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 6573038 - 6573151
Alignment:
Q  38 tctgcttgttttggatgatgtctggaacggtagtgcggaatgttgggagcgcttactacttccttttaacaatggatctaccggaagtaagattattgtg 137  Q
    |||||||||| | |||||||| ||||| || | || ||| |||| |||||  ||||||||| |||| ||| |||||| |   ||||| ||||||||||||    
T  6573038 tctgcttgttctagatgatgtgtggaaagggaatgaggagtgtttggagcaattactactttctttcaaccatggatttttaggaagcaagattattgtg 6573137  T
Q  138 acaacacgtgacaa 151  Q
    ||||||||||||||    
T  6573138 acaacacgtgacaa 6573151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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