View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9647_low_1 (Length: 307)
Name: NF9647_low_1
Description: NF9647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9647_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 295
Target Start/End: Complemental strand, 8337340 - 8337047
Alignment:
| Q |
4 |
atgattcaaaacatcaaatttgattttgattttactatttaccataacttctaaaatataaaatctcttgagaataattttttctcgagaatattaaatc |
103 |
Q |
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| T |
8337340 |
atgattcaaaacatcaaatttgattttgattttactatttaccataacttctaaaatataaaatctcttgagaatcattttttctcgagaatattaaatc |
8337241 |
T |
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| Q |
104 |
aaaatgatgaaaaatgatttaaagcnnnnnnntataatttgattttatcatataccatagcatctaaaatataaagtatctcgagaatcatttccattaa |
203 |
Q |
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| T |
8337240 |
aaaataatgaaaaatgatttaaagcaaaaaaatataatttgattttatcatataccataacatctaaaatataaaatatctcgagaatcatttccattaa |
8337141 |
T |
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| Q |
204 |
caattttcctcnnnnnnnnnnnnnntccattaac----aattacattaccaaatatacgttatataaatttcaaattatctacttatggagagtat |
295 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8337140 |
caattttcctcaaaaaaaaaaaaa--ccattaacaattaattacattaccaaatatacgttatataaatttcaaattatctacttatggagagtat |
8337047 |
T |
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