View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9647_low_6 (Length: 246)

Name: NF9647_low_6
Description: NF9647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9647_low_6
NF9647_low_6
[»] chr8 (10 HSPs)
chr8 (19-187)||(27805899-27806067)
chr8 (19-152)||(12104784-12104919)
chr8 (19-119)||(5951844-5951944)
chr8 (19-119)||(33383078-33383178)
chr8 (19-119)||(2848117-2848217)
chr8 (19-105)||(29354012-29354098)
chr8 (19-117)||(15928951-15929049)
chr8 (19-93)||(19490378-19490452)
chr8 (19-60)||(8856248-8856289)
chr8 (19-60)||(8857721-8857762)
[»] chr3 (6 HSPs)
chr3 (19-187)||(23048629-23048796)
chr3 (19-187)||(17545104-17545271)
chr3 (19-187)||(50096331-50096499)
chr3 (19-138)||(43683208-43683325)
chr3 (34-119)||(10558353-10558438)
chr3 (36-120)||(28717075-28717159)
[»] chr6 (4 HSPs)
chr6 (19-187)||(11184358-11184526)
chr6 (19-119)||(964477-964577)
chr6 (19-119)||(20110316-20110416)
chr6 (19-59)||(27315657-27315697)
[»] chr5 (6 HSPs)
chr5 (19-187)||(20473890-20474058)
chr5 (19-187)||(31375272-31375440)
chr5 (19-119)||(43104191-43104291)
chr5 (19-119)||(36700182-36700282)
chr5 (34-119)||(22035577-22035662)
chr5 (34-119)||(22038803-22038888)
[»] chr2 (6 HSPs)
chr2 (19-169)||(3251991-3252141)
chr2 (19-187)||(16880815-16880983)
chr2 (19-187)||(17038505-17038673)
chr2 (19-119)||(6277456-6277556)
chr2 (34-119)||(35076632-35076717)
chr2 (34-119)||(35079890-35079975)
[»] chr7 (10 HSPs)
chr7 (19-187)||(18970884-18971052)
chr7 (19-187)||(18974050-18974218)
chr7 (19-138)||(7570044-7570163)
chr7 (19-138)||(7576459-7576578)
chr7 (19-119)||(5189991-5190091)
chr7 (34-119)||(44673338-44673423)
chr7 (34-119)||(1633998-1634083)
chr7 (34-119)||(1637243-1637328)
chr7 (36-119)||(20436476-20436559)
chr7 (19-119)||(21659335-21659435)
[»] chr1 (9 HSPs)
chr1 (19-187)||(8434804-8434972)
chr1 (19-187)||(21914213-21914381)
chr1 (19-138)||(28956851-28956970)
chr1 (34-119)||(14159608-14159693)
chr1 (34-119)||(28142406-28142491)
chr1 (36-119)||(1941459-1941542)
chr1 (34-119)||(28139155-28139240)
chr1 (19-119)||(25663383-25663483)
chr1 (187-227)||(21914405-21914445)
[»] chr4 (8 HSPs)
chr4 (86-187)||(34856880-34856980)
chr4 (19-94)||(34855931-34856006)
chr4 (19-93)||(21614606-21614680)
chr4 (19-121)||(48962000-48962102)
chr4 (19-119)||(54899522-54899622)
chr4 (38-119)||(12705703-12705784)
chr4 (34-131)||(22884619-22884717)
chr4 (34-131)||(22936283-22936381)
[»] scaffold0146 (1 HSPs)
scaffold0146 (37-119)||(35559-35641)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-119)||(156816-156916)
[»] scaffold1206 (1 HSPs)
scaffold1206 (49-119)||(1885-1955)
[»] scaffold2047 (1 HSPs)
scaffold2047 (19-94)||(867-942)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 27805899 - 27806067
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||     
T  27805899 ataaaagcattacgcacaatttatactgaataacctagaataacattcatgataattcagagttatagattacataatcatgagctagaataaaatcatg 27805998  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  27805999 tatgacctaatcaatgaaaattagccactcatgataaaagaatttaaacaacaaggttaaaagaaatta 27806067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 12104784 - 12104919
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtc-atgagctagaacaaaatcat 117  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||| ||||||| | | |  |||||||||| ||||||    
T  12104784 ataaaaggattacgcacaatttatattgaataaactagaataacaatcataataattcagagttacaaattacatggccaaaaagctagaacagaatcat 12104883  T
Q  118 ctatgatctaatcaattgaaa-ttagccactcatga 152  Q
    ||  || |||||||||||||| ||||| ||||||||    
T  12104884 ctcagacctaatcaattgaaacttagctactcatga 12104919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 5951944 - 5951844
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||| |  ||| ||||||| || |||||||  ||||||||||||||||||||||    
T  5951944 ataaaagcattaagaacaatttatactgaataaactagaataacattcataaagattaagagttaaaggttacataaacatgagctagaacaaaatcatc 5951845  T
Q  119 t 119  Q
    |    
T  5951844 t 5951844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 33383178 - 33383078
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   |||||||||||||||||||||||||| |||||||| |  ||| ||||||| || |||||||  ||||||||||||||||||||||    
T  33383178 ataaaagcattaagaacaatttatactgaataaactagaatgacattcataaagattaagagttataggttacataaacatgagctagaacaaaatcatc 33383079  T
Q  119 t 119  Q
    |    
T  33383078 t 33383078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 2848117 - 2848217
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   ||||||||||||||||||||||||||  ||||||| |  ||| ||||||| || |||||||  |||||||||||||||||| |||    
T  2848117 ataaaagcattaagaacaatttatactgaataaactagaatttcattcataaagatttagagttataggttacataaacatgagctagaacaaaattatc 2848216  T
Q  119 t 119  Q
    |    
T  2848217 t 2848217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 29354098 - 29354012
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagcta 105  Q
    ||||||||||||   |||||||||||||||||||||||||| |||||||| |  ||| |||||||||  |||||||  |||||||||    
T  29354098 ataaaagcattaacaacaatttatactgaataaactagaatgacattcataaagattaagagttacatgttacataaacatgagcta 29354012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 15928951 - 15929049
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcat 117  Q
    |||||||| ||| | | |||||||| |||||||||||||||  ||||||| |   || |||||||||| ||||||  |  |||||||||||||||||||    
T  15928951 ataaaagctttaaagataatttataatgaataaactagaatggcattcataaagtttaagagttacaggttacattctattgagctagaacaaaatcat 15929049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 19490378 - 19490452
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacat 93  Q
    ||||||||||||   | ||||| ||||||||||||||| |||||||| || ||||| |||  |||||||||||||    
T  19490378 ataaaagcattaagaataatttgtactgaataaactaggataacatttataataatgcagttttacagattacat 19490452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 8856248 - 8856289
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaata 60  Q
    ||||||||||||  |||| |||||||||||||||||||||||    
T  8856248 ataaaagcattatgcacagtttatactgaataaactagaata 8856289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 8857721 - 8857762
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaata 60  Q
    ||||||||||||  |||| |||||||||||||||||||||||    
T  8857721 ataaaagcattatgcacagtttatactgaataaactagaata 8857762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 23048796 - 23048629
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23048796 ataaaagcattacgcacaatttatactgaataacct-gaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 23048698  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||| ||||||||| ||||||||||| |||| |||||||||||||||||| ||| ||| |||||||||    
T  23048697 tatgacctaatcaatagaaattagccattcataataaaagaatttaaacaacaagattaaaagaaatta 23048629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 17545104 - 17545271
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||| || || | ||||||||||| ||||||     
T  17545104 ataaaagcattacacacaatttatactgaataa-ctagaataactttcataataattcagagctacagattaaatggttaagagctagaacagaatcata 17545202  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||| ||| ||||||| |||||||||    
T  17545203 tatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaatta 17545271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 50096499 - 50096331
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||||  |||||||||| ||||||||||||||||| ||||| |||||| |||| |||||||||| | ||||||||||| |||| |||||||    
T  50096499 ataaaagcattacatgcaatttataccgaataaactagaataactttcataataattaagagctacagattacttggtcatgagctataacagaatcatc 50096400  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||| ||||||||| |||| ||||||||||| |||||||| ||||||||| ||||||| |||||||||    
T  50096399 tatgacctaatcaatggaaactagccactcataataaaagactttaaacaacaaggttaaaagaaatta 50096331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 43683325 - 43683208
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    |||||||||||||| |  ||||||||||||||||||  |||||||||||| | |||| |||||||||||||||||  ||||||||||||||| |||||||    
T  43683325 ataaaagcattacata--atttatactgaataaactgaaataacattcataaaaatttagagttacagattacatgatcatgagctagaacagaatcatc 43683228  T
Q  119 tatgatctaatcaattgaaa 138  Q
    ||||| ||||| ||| ||||    
T  43683227 tatgacctaattaatagaaa 43683208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 10558353 - 10558438
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||||||||||||||||||  ||||||| |  ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  10558353 acaatttatactgaataaactagaatggcattcataaagattaagagttgcaggttacataaacatgagctagaacaaaatcatct 10558438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 28717075 - 28717159
Alignment:
Q  36 aatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatcta 120  Q
    |||||||||| |||||||||||||||||||||| |  ||| ||||||| || |||||  ||||| |||||||||| |||||||||    
T  28717075 aatttatactaaataaactagaataacattcataaagatttagagttataggttacactgtcataagctagaacagaatcatcta 28717159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 11184358 - 11184526
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||| | |||||||||||||||| |||||||    
T  11184358 ataaaagcattacacacaatttataccgaataaactagaataactttcataataattcagagctacagattacttggtcatgagctagaacagaatcatc 11184457  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  11184458 tatgacctaatcaatggaaattagccactcataataaaagaatttaaacaacaaggttaaaagaaatta 11184526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 964577 - 964477
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   ||||||||||||||||||||||||||| ||||||| |  ||| |||||||||| |||||||  ||||||||||||||||||||||    
T  964577 ataaaagcattaagaacaatttatactgaataaactagaatagcattcataaagattaagagttacaggttacataaacatgagctagaacaaaatcatc 964478  T
Q  119 t 119  Q
    |    
T  964477 t 964477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 20110316 - 20110416
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   |||||||||||||||||||||||||| |||||||| |  ||| |||||||||| |||||||  |||||| |||||||||||||||    
T  20110316 ataaaagcattaagaacaatttatactgaataaactagaatgacattcataaagattaagagttacaggttacataaacatgagatagaacaaaatcatc 20110415  T
Q  119 t 119  Q
    |    
T  20110416 t 20110416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 27315697 - 27315657
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaat 59  Q
    |||||||||||| | || |||||||||||||||||||||||    
T  27315697 ataaaagcattaaaaacgatttatactgaataaactagaat 27315657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 20473890 - 20474058
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| | |||||||||||||||| |||||||    
T  20473890 ataaaagcattacacacaatttatactgaataaactagaataactttcataataattcagagctacagattacttggtcatgagctagaacagaatcatc 20473989  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||| ||||||||| |||||||||||||||| ||| |||||||||||||| ||||||| |||||||||    
T  20473990 tatgacctaatcaatagaaattagccactcataatacaagaatttaaacaacaaggttaaaagaaatta 20474058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 31375440 - 31375272
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  31375440 ataaaagcattacgcacaatttatactaaataacctagaataactttcataataattcagagctacagattacatggtcatgagctagaacagaatcatc 31375341  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||| ||| ||||||| |||||||||    
T  31375340 tatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaatta 31375272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 43104191 - 43104291
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   |||||||||||||||||||||||||| |||||||| |  ||| |||||||||| |||||||  ||||||||||||||||||||||    
T  43104191 ataaaagcattaagaacaatttatactgaataaactagaatgacattcataaagattaagagttacaggttacataaacatgagctagaacaaaatcatc 43104290  T
Q  119 t 119  Q
    |    
T  43104291 t 43104291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 36700282 - 36700182
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   || ||||||||||||||||||||||| |||||||| |  ||| |||||||||| |||||||  ||||||||||||||||||||||    
T  36700282 ataaaagcattaagaacgatttatactgaataaactagaatgacattcataaatattaagagttacaggttacataaacatgagctagaacaaaatcatc 36700183  T
Q  119 t 119  Q
    |    
T  36700182 t 36700182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 22035662 - 22035577
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||||||||||||||||||  ||||||| |  ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  22035662 acaatttatactgaataaactagaatggcattcataaagattaagagttgcaggttacataaacatgagctagaacaaaatcatct 22035577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 22038888 - 22038803
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||||||||||||||||||  ||||||| |  ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  22038888 acaatttatactgaataaactagaatggcattcataaagattaagagttgcaggttacataaacatgagctagaacaaaatcatct 22038803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 3252141 - 3251991
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3252141 ataaaagcattacgcacaatttatacttaataacctggaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaattatc 3252042  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaa 169  Q
    ||||| |||||||||  |||||||||| |||||||||||||||||||||||    
T  3252041 tatgacctaatcaatgaaaattagccaatcatgataaaagaatttaaacaa 3251991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 16880983 - 16880815
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   || ||||||||||||||||||||||| |||||||| |  ||| |||||||||| ||| |||||||||||||||||||||||||||    
T  16880983 ataaaagcattaagaacgatttatactgaataaactagaatgacattcataaagattaagagttacaggttagatagtcatgagctagaacaaaatcatc 16880884  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  16880883 tatgatctaatcaatggaaattagccactcatgataaaagaatttaaacaacaaggttaaaagaaatta 16880815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 17038673 - 17038505
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   || ||||||||||||||||||||||| |||||||| |  ||| |||||||||| ||| |||||||||||||||||||||||||||    
T  17038673 ataaaagcattaagaacgatttatactgaataaactagaatgacattcataaagattaagagttacaggttagatagtcatgagctagaacaaaatcatc 17038574  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  17038573 tatgatctaatcaatggaaattagccactcatgataaaagaatttaaacaacaaggttaaaagaaatta 17038505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 6277456 - 6277556
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   | |||||||||||||||||||||||| |||||||| |  ||| ||||||| || |||||||  ||||||||||||||||||||||    
T  6277456 ataaaagcattaagaagaatttatactgaataaactagaatgacattcataaagattaagagttataggttacataaacatgagctagaacaaaatcatc 6277555  T
Q  119 t 119  Q
    |    
T  6277556 t 6277556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 35076717 - 35076632
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||||||||||||||||||  ||||||| |  ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  35076717 acaatttatactgaataaactagaatggcattcataaagattaagagttgcaggttacataaacatgagctagaacaaaatcatct 35076632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 35079975 - 35079890
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||||||||||||||||||  ||||||| |  ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  35079975 acaatttatactgaataaactagaatggcattcataaagattaagagttgcaggttacataaacatgagctagaacaaaatcatct 35079890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 18970884 - 18971052
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||| |||||||||||| |||||||| ||||||| |||||||    
T  18970884 ataaaagcattacacacaatttatattgaataaactagaataactttcataatgattcagagctacagattacatggtcatgagttagaacagaatcatc 18970983  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||| ||| ||||||| |||||||||    
T  18970984 tatgacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaatta 18971052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 18974050 - 18974218
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||| ||||||||||| | |||||||||| ||||| ||||| ||||||||||| |||||||||||| |||||||||||  |||||||||||    
T  18974050 ataaaagcattacgcacaatttatattaaataaactaggataactttcataataattcagagctacagattacatggtcatgagctaatacaaaatcatc 18974149  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||| | ||||||||| |||||||||||||||| |||||||||||||| ||| ||||||| |||||||||    
T  18974150 tataacctaatcaatggaaattagccactcataataaaagaatttaagcaacaaggttaaaagaaatta 18974218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 7570163 - 7570044
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    |||||||||||||||| ||||||||||||||||| |  |||||||||||| |||||| ||||||||| |||||||  ||||||||||||||| |||||||    
T  7570163 ataaaagcattacacataatttatactgaataaaatgaaataacattcataataatttagagttacatattacatgatcatgagctagaacagaatcatc 7570064  T
Q  119 tatgatctaatcaattgaaa 138  Q
    ||||| ||||||||| ||||    
T  7570063 tatgacctaatcaatagaaa 7570044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 7576578 - 7576459
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    |||||||||||||||| ||||||||||||||||| |  |||||||||||| |||||| ||||||||| |||||||  ||||||||||||||| |||||||    
T  7576578 ataaaagcattacacataatttatactgaataaaatgaaataacattcataataatttagagttacatattacatgatcatgagctagaacagaatcatc 7576479  T
Q  119 tatgatctaatcaattgaaa 138  Q
    ||||| ||||||||| ||||    
T  7576478 tatgacctaatcaatagaaa 7576459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 5189991 - 5190091
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   |||||||||||||||||||||||||| |||||||| |  ||| |||||||||| |||||||  ||||||||||||||||||||||    
T  5189991 ataaaagcattaagaacaatttatactgaataaactagaatgacattcataaagattaagagttacaggttacataaacatgagctagaacaaaatcatc 5190090  T
Q  119 t 119  Q
    |    
T  5190091 t 5190091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 44673338 - 44673423
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    |||||||||||||||||||||||||| |||||||| |  ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  44673338 acaatttatactgaataaactagaatgacattcataaagattaagagttgcaggttacataaacatgagctagaacaaaatcatct 44673423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 1633998 - 1634083
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||||||||||||||||||  ||||||| |  ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  1633998 acaatttatactgaataaactagaatggcattcataaagattaagagttgcaggttacataaacatgagctagaacaaaatcatct 1634083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 1637243 - 1637328
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||||||||||||||||||  ||||||| |  ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  1637243 acaatttatactgaataaactagaatggcattcataaagattaagagttgcaggttacataaacatgagctagaacaaaatcatct 1637328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 20436559 - 20436476
Alignment:
Q  36 aatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    |||||||| ||||||||||||||| |||||||| |  ||| |||||||||| |||||| ||  |||||||||||||||||||||    
T  20436559 aatttatattgaataaactagaatgacattcataaagattaagagttacaggttacattgtactgagctagaacaaaatcatct 20436476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 21659335 - 21659435
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   | |||||||||||||||||||||||| ||| || | | |||| |||||||||  |||||| ||  | |||||||||| |||||||    
T  21659335 ataaaagcattaagaataatttatactgaataaactagaatgacaatcttaaaaattaagagttacaagttacattgtactaagctagaacagaatcatc 21659434  T
Q  119 t 119  Q
    |    
T  21659435 t 21659435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 8434972 - 8434804
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||||| |||| |||||||||||||||| |||||| ||||| ||||||||||| |||| ||||||| ||||||||||||||||  ||||||    
T  8434972 ataaaagcattacacgcaatctatactgaataaactataataactttcataataattcagagctacacattacatggtcatgagctagaacaggatcatc 8434873  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||| || |||||| |||||||| ||||||| |||||||||| ||||||| ||||||| |||||||||    
T  8434872 tatgacctgatcaatggaaattaggcactcataataaaagaatgtaaacaacaaggttaaaagaaatta 8434804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 21914213 - 21914381
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   || |||| ||| ||||||| ||||||  ||||||| |  ||| |||||||||| |||||||||||||||||||||||||||||||    
T  21914213 ataaaagcattaagaacgatttctaccgaataaattagaatggcattcataaagattaagagttacaggttacatagtcatgagctagaacaaaatcatc 21914312  T
Q  119 tatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaatta 187  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||||    
T  21914313 tatgacctaatcaatggaaattagccactcatgataaaagaatttaaacaacaaggttaaaacaaatta 21914381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 28956970 - 28956851
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    |||||||||||||||| |||||||||||||||||||  |||||||||| | |||||||||| |||||||||||||  ||||||||||||||| |||||||    
T  28956970 ataaaagcattacacataatttatactgaataaactgaaataacattcttaataattcagaattacagattacatgatcatgagctagaacagaatcatc 28956871  T
Q  119 tatgatctaatcaattgaaa 138  Q
    ||||| ||||| ||| ||||    
T  28956870 tatgacctaattaatagaaa 28956851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 14159608 - 14159693
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||||||||||||||||||  ||||||| |  ||| |||||||||| |||||||  |||||||||||||||||||||||    
T  14159608 acaatttatactgaataaactagaatggcattcataaagattaagagttacaggttacataaacatgagctagaacaaaatcatct 14159693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 28142406 - 28142491
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    |||||||||||||||||||||||||| |||||||| |  ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  28142406 acaatttatactgaataaactagaatgacattcataaagattaagagttgcaggttacataaacatgagctagaacaaaatcatct 28142491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 1941542 - 1941459
Alignment:
Q  36 aatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    |||||||||||||||||||||||| |||||||| |  ||| |||||||||  |||||||  |||||||||||||||||||||||    
T  1941542 aatttatactgaataaactagaatgacattcataaagattaagagttacaagttacataaacatgagctagaacaaaatcatct 1941459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 28139155 - 28139240
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||||||||||||||||||  ||||||| |  ||| |||||| ||| |||||||  |||||||||||||||||||||||    
T  28139155 acaatttatactgaataaactagaatggcattcataaagattaagagttgcaggttacataaacatgagctagaacaaaatcatct 28139240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 25663383 - 25663483
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   |||||||||||||||||||||||||| |||||||| |  ||| |||||||||  ||||||  |  ||||||||||||||||||||    
T  25663383 ataaaagcattaagaacaatttatactgaataaactagaatgacattcataaagattaagagttacatgttacattatactgagctagaacaaaatcatc 25663482  T
Q  119 t 119  Q
    |    
T  25663483 t 25663483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 21914405 - 21914445
Alignment:
Q  187 aaatttcttccatccgtaatgctactcttctacatgcgtgc 227  Q
    |||||||||| |||||| |||||||||||||| ||||||||    
T  21914405 aaatttcttcaatccgtgatgctactcttctatatgcgtgc 21914445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 34856880 - 34856980
Alignment:
Q  86 gattacatagtcatgagctagaacaaaatcatctatgatctaatcaattgaaattagccactcatgataaaagaatttaaacaataaggttagaagaaat 185  Q
    ||||||||| ||||||||||||| | |||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  34856880 gattacata-tcatgagctagaagagaatcatctatgacctaatcaatggaaattaaccactcatgataaaagaatttaaacaacaaggttaaaagaaat 34856978  T
Q  186 ta 187  Q
    ||    
T  34856979 ta 34856980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 34855931 - 34856006
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacata 94  Q
    ||||||||||||| || |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  34855931 ataaaagcattacgcataatttatactgaataaactgaaataacattcatgataattcagagttacatattacata 34856006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 21614606 - 21614680
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacat 93  Q
    |||||| ||| || ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||    
T  21614606 ataaaatcatcacgcacaatttatactgaataaactagaataacaatcataataattcagagttacatattacat 21614680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 48962000 - 48962102
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   |||||||||||| |||||||||||||  ||||||| |  ||| |||||||||| |||||||  ||||||||||||||||||||||    
T  48962000 ataaaagcattaagaacaatttatacttaataaactagaatggcattcataaagattaagagttacaggttacataaacatgagctagaacaaaatcatc 48962099  T
Q  119 tat 121  Q
    |||    
T  48962100 tat 48962102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 54899622 - 54899522
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   || ||||||||||||||||||||||| |||||||| |  ||| |||||||||| |||||||  |||||||||||||| |||||||    
T  54899622 ataaaagcattaagaaccatttatactgaataaactagaatgacattcataaagattaagagttacaggttacatatacatgagctagaacagaatcatc 54899523  T
Q  119 t 119  Q
    |    
T  54899522 t 54899522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 12705784 - 12705703
Alignment:
Q  38 tttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    |||||| |||||||||||||||  ||||||| |  ||| |||||||||  |||||||  |||||| ||||||||||||||||    
T  12705784 tttataatgaataaactagaatggcattcataaagattaagagttacaagttacataaacatgagttagaacaaaatcatct 12705703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 22884619 - 22884717
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct-atgatctaatca 131  Q
    |||||||||| | ||||||||| ||| |||||||| |  ||| |||||||||  ||| |||  |||||||||||||| ||||||||  |||||||||||    
T  22884619 acaatttatattaaataaactataatgacattcataacgattaagagttacatgttatataaacatgagctagaacataatcatctcttgatctaatca 22884717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 22936283 - 22936381
Alignment:
Q  34 acaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct-atgatctaatca 131  Q
    |||||||||| | ||||||||| ||| |||||||| |  ||| |||||||||  ||| |||  |||||||||||||| ||||||||  |||||||||||    
T  22936283 acaatttatattaaataaactataatgacattcataacgattaagagttacatgttatataaacatgagctagaacataatcatctcttgatctaatca 22936381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 119
Target Start/End: Complemental strand, 35641 - 35559
Alignment:
Q  37 atttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||||||||||||||| |||||||| |  ||| |||||||| | |||||||  |||||||||||||||||||||||    
T  35641 atttatactgaataaactagaatgacattcataaatattaagagttacgggttacataaacatgagctagaacaaaatcatct 35559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 156916 - 156816
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatc 118  Q
    ||||||||||||   |||||||||||||||||||||||||| |||||||| || ||| ||||||||   |||| ||  ||||||||| |||| |||||||    
T  156916 ataaaagcattaacaacaatttatactgaataaactagaatgacattcataatgattaagagttactagttacgtaaacatgagctaaaacagaatcatc 156817  T
Q  119 t 119  Q
    |    
T  156816 t 156816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1206 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1206
Description:

Target: scaffold1206; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 1955 - 1885
Alignment:
Q  49 taaactagaataacattcatgataattcagagttacagattacatagtcatgagctagaacaaaatcatct 119  Q
    ||||||||||| |||||||| |  ||| |||||||||  |||||||  |||||||||||||||||||||||    
T  1955 taaactagaatgacattcataaatatttagagttacatgttacataaacatgagctagaacaaaatcatct 1885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2047 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold2047
Description:

Target: scaffold2047; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 942 - 867
Alignment:
Q  19 ataaaagcattacacacaatttatactgaataaactagaataacattcatgataattcagagttacagattacata 94  Q
    ||||||||||||   || ||||||||||||||||||||||| |||||||| |  ||| |||||||||  |||||||    
T  942 ataaaagcattaagaacgatttatactgaataaactagaatgacattcataaagattaagagttacatgttacata 867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University