View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9647_low_8 (Length: 222)
Name: NF9647_low_8
Description: NF9647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9647_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 5466792 - 5466983
Alignment:
| Q |
17 |
acttaaaacatttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggttctctcaatacgctcaattaccttga |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5466792 |
acttaaaacatttgagtcacttggacttgagctataatgatttcaaaggagttcccattcctgaatttattggttctctcaatacgctcaattaccttga |
5466891 |
T |
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| Q |
117 |
tttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcatgatgtctctggcccaagtataa |
208 |
Q |
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| T |
5466892 |
tttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcttgatgtctctggcccaagtataa |
5466983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 5481536 - 5481714
Alignment:
| Q |
17 |
acttaaaacatttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggttctctcaatacgctcaattaccttga |
116 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5481536 |
acttaaaacatttgagtcacttggacctaagctttaatgatttcaaaggagttcccattccagaatttattggttctctcaatatgctcaattaccttga |
5481635 |
T |
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| Q |
117 |
tttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcatgatgtctct |
195 |
Q |
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| T |
5481636 |
cttatctaatgcaaattttacaggaatggtccttcctcatcttggcaatctgtcaaatttgcattatcttgatatctct |
5481714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 5495367 - 5495545
Alignment:
| Q |
17 |
acttaaaacatttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggttctctcaatacgctcaattaccttga |
116 |
Q |
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| T |
5495367 |
acttgaaacacttgagtcacttggacctaagatataatgatttcgaaggagttcccattccagaatttattggttccctcaatatgctcaattaccttga |
5495466 |
T |
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| Q |
117 |
tttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcatgatgtctct |
195 |
Q |
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| T |
5495467 |
cttatcagattcatatttttctggaatggtcccccctcatcttggcaatttgtcaaacttgcattatcttgatatctct |
5495545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 5489585 - 5489769
Alignment:
| Q |
17 |
acttaaaacatttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggttctctcaatacgctcaattaccttga |
116 |
Q |
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|||| ||||| ||||||||||||||| ||||||||| ||| || |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
5489585 |
acttgaaacacttgagtcacttggacctaagctatagtgactttgaaggagctcccattccagaatttattggttatctcaatatgctcaattaccttga |
5489684 |
T |
|
| Q |
117 |
tttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcatgatgtctctggccca |
201 |
Q |
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| T |
5489685 |
cttgtccaatgcaaatttcactggaatggtcccgactaatcttggcaatttatcaaatttacactatcttgatatctctagccca |
5489769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 5476460 - 5476638
Alignment:
| Q |
17 |
acttaaaacatttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggttctctcaatacgctcaattaccttga |
116 |
Q |
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|||| ||||| ||||||||||||||| | || || ||| | ||||||||| || |||||||||||||||||||||||||||||| ||| ||||| ||||| |
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| T |
5476460 |
acttgaaacacttgagtcacttggacctgagttacaataacttcaaaggaatttccattccagaatttattggttctctcaatatgctgaattatcttga |
5476559 |
T |
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| Q |
117 |
tttatcccatgcaaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgcatcatcatgatgtctct |
195 |
Q |
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| T |
5476560 |
cttatctaattcaaaatttacaggaatggtccctactgatcttggtaatttgtcaaatttgcaccatcttgatatctct |
5476638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 178
Target Start/End: Original strand, 5484411 - 5484561
Alignment:
| Q |
28 |
ttgagtcacttggacttaagctataatgatttcaaaggagttcccattccagaatttattggttctctcaatacgctcaattaccttgatttatcccatg |
127 |
Q |
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|||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||| | | | ||||||||||| |||| ||| |
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| T |
5484411 |
ttgagtcacttggacttaagcttcaatgatttcgaaggaattcccattccagaacatattggttctctcaaaatgttgaattaccttgacctatcaaatg |
5484510 |
T |
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| Q |
128 |
caaatttttctggaatggtccctcctcatctcggaaatttgtcaaatttgc |
178 |
Q |
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|||||||| ||||||| |||||| |||||| || |||||||||||||||| |
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| T |
5484511 |
caaattttactggaattgtccctaatcatcttggcaatttgtcaaatttgc |
5484561 |
T |
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