View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9648_high_3 (Length: 275)
Name: NF9648_high_3
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9648_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 37876847 - 37877111
Alignment:
| Q |
1 |
cattcagattgctaaaagaataat--gctagcaacttcaaactattcctaagacccttaaagccacccatattatttgactgctggtactattttataca |
98 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37876847 |
cattcagattgctaaaagaataatatgctagcaacttcaaactattcctaagacccttaaagccacccatattatttgactgctggtactattt-ataca |
37876945 |
T |
|
| Q |
99 |
atgtaactccgagaa---gcagcatgtgtaacctacaaataaaattctaatcctgtttcctcatatctacacctagctagctgaaaatcctaccgtctgt |
195 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37876946 |
atgtaactccgagaaccagcagcatgtgtaacctacaaagaaaattctaatcctgtttcctcatatctacacctagctagctgaaaatcctaccgtctgt |
37877045 |
T |
|
| Q |
196 |
caatcactgacaaacaaatcacgatgtttaagatgaattcgatctccgcagtttccgttttggtct |
261 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37877046 |
caatcacagacaaacaaatcacgatgtttaagatgaatttgatctccgcagtttccgttttggtct |
37877111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 23894834 - 23894570
Alignment:
| Q |
1 |
cattcagattgctaaaagaataat--gctagcaacttcaaactattcctaagacccttaaagccacccatattatttgactgctggtactattttataca |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23894834 |
cattcagattgctaaaagaataatatgctagcaacttcaaactattcctaagacccttaaagccacccatattatttgactgctggtactattt-ataca |
23894736 |
T |
|
| Q |
99 |
atgtaactccgagaa---gcagcatgtgtaacctacaaataaaattctaatcctgtttcctcatatctacacctagctagctgaaaatcctaccgtctgt |
195 |
Q |
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|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23894735 |
atgtaactccgagaaccagcagcatgtgtaacctacaaagaaaattctaatcctgtttcctcatatctacacctagctagctgaaaatcctaccgtctgt |
23894636 |
T |
|
| Q |
196 |
caatcactgacaaacaaatcacgatgtttaagatgaattcgatctccgcagtttccgttttggtct |
261 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23894635 |
caatcacagacaaacaaatcacgatgtttaagatgaatttgatctccgcagtttccgttttggtct |
23894570 |
T |
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