View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9648_high_5 (Length: 259)
Name: NF9648_high_5
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9648_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 61 - 250
Target Start/End: Original strand, 37876681 - 37876870
Alignment:
| Q |
61 |
atcactctaagtctattaacaaataatgacacaaacaatcattcatgcgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg |
160 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37876681 |
atcactctaagtctattaacaaataatggcacaaacaatcattcttgtgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg |
37876780 |
T |
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| Q |
161 |
taaacaggtcattccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccacggcattcagattgctaaaagaataat |
250 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37876781 |
taaacaggtcgttccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccatggcattcagattgctaaaagaataat |
37876870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 61 - 250
Target Start/End: Complemental strand, 23895000 - 23894811
Alignment:
| Q |
61 |
atcactctaagtctattaacaaataatgacacaaacaatcattcatgcgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg |
160 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23895000 |
atcactctaagtctattaacaaataatggcacaaacaatcattcttgtgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg |
23894901 |
T |
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| Q |
161 |
taaacaggtcattccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccacggcattcagattgctaaaagaataat |
250 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23894900 |
taaacaggtcgttccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccatggcattcagattgctaaaagaataat |
23894811 |
T |
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