View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9648_high_7 (Length: 240)
Name: NF9648_high_7
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9648_high_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 6354276 - 6354054
Alignment:
| Q |
18 |
ccaaggtgtttacaaagtgttttccaacccaataacgttagcctctaaaattactaaaagtttcctcctttggtttgacaagattaaacacacnnnnnnn |
117 |
Q |
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| T |
6354276 |
ccaaagtgtttacaaagtgttttccaacccaataacgttagcctctaaaattactaaaagtttcctcctttgatttgacaagattaaacacacaaaaaaa |
6354177 |
T |
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| Q |
118 |
ngtcttggcctcttatacacctcagaaagaaagnnnnnnncagacacttgcactgcactttgcgcctcgcacagcccatgcggccaacgcagtttgtact |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6354176 |
agtcttggcctcttatacacctcagaaagaaagaaaaaaacagacacttgcactgcactttgcgcctcgcacagcccatgcggccaacgcagtttgtact |
6354077 |
T |
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| Q |
218 |
ctactgacctctacacagctacc |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
6354076 |
ctactgacctctacacagctacc |
6354054 |
T |
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