View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9648_low_1 (Length: 548)

Name: NF9648_low_1
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9648_low_1
NF9648_low_1
[»] chr4 (20 HSPs)
chr4 (154-376)||(14985782-14986004)
chr4 (10-163)||(14985177-14985330)
chr4 (468-535)||(19857058-19857125)
chr4 (468-535)||(361731-361798)
chr4 (468-519)||(9637618-9637669)
chr4 (490-535)||(6190126-6190171)
chr4 (492-535)||(361665-361708)
chr4 (468-519)||(4859053-4859104)
chr4 (468-519)||(33244469-33244520)
chr4 (468-519)||(51992284-51992335)
chr4 (468-511)||(10357757-10357800)
chr4 (468-519)||(16296262-16296313)
chr4 (468-519)||(13037042-13037093)
chr4 (468-519)||(19436000-19436051)
chr4 (468-511)||(19734107-19734150)
chr4 (468-511)||(40229253-40229296)
chr4 (468-502)||(46642377-46642411)
chr4 (471-520)||(33185675-33185724)
chr4 (499-535)||(361600-361636)
chr4 (468-502)||(44773613-44773647)
[»] chr7 (28 HSPs)
chr7 (53-272)||(5618905-5619124)
chr7 (468-535)||(14270612-14270679)
chr7 (468-535)||(45848201-45848268)
chr7 (468-535)||(8467980-8468047)
chr7 (468-535)||(17232105-17232172)
chr7 (468-519)||(12757377-12757428)
chr7 (468-519)||(30822092-30822143)
chr7 (470-519)||(16458678-16458727)
chr7 (468-519)||(18876125-18876176)
chr7 (468-519)||(36686477-36686528)
chr7 (468-519)||(48811562-48811613)
chr7 (470-520)||(43278022-43278072)
chr7 (468-511)||(11066159-11066202)
chr7 (468-511)||(12371035-12371078)
chr7 (468-511)||(14220328-14220371)
chr7 (468-511)||(15120593-15120636)
chr7 (468-511)||(44373706-44373749)
chr7 (468-511)||(44382571-44382614)
chr7 (468-502)||(6170709-6170743)
chr7 (468-502)||(15439258-15439292)
chr7 (470-511)||(19281811-19281852)
chr7 (468-519)||(14162161-14162212)
chr7 (468-511)||(32434907-32434950)
chr7 (468-511)||(47093898-47093941)
chr7 (468-502)||(10064304-10064338)
chr7 (468-502)||(18423317-18423351)
chr7 (468-497)||(13699955-13699984)
chr7 (470-511)||(37785594-37785635)
[»] chr1 (14 HSPs)
chr1 (468-543)||(46383127-46383203)
chr1 (468-535)||(41306165-41306232)
chr1 (468-519)||(20587457-20587508)
chr1 (468-519)||(20591995-20592046)
chr1 (470-519)||(16059607-16059656)
chr1 (468-519)||(7053281-7053332)
chr1 (468-511)||(24723856-24723899)
chr1 (468-511)||(38888349-38888392)
chr1 (468-511)||(41227969-41228012)
chr1 (468-511)||(1642253-1642296)
chr1 (468-511)||(20634850-20634893)
chr1 (468-502)||(8277192-8277226)
chr1 (468-498)||(28195056-28195086)
chr1 (470-511)||(51475785-51475826)
[»] scaffold0116 (1 HSPs)
scaffold0116 (468-535)||(44362-44429)
[»] chr8 (20 HSPs)
chr8 (468-535)||(1323655-1323722)
chr8 (468-535)||(38550563-38550630)
chr8 (468-535)||(13428620-13428687)
chr8 (468-535)||(27472860-27472925)
chr8 (490-535)||(19801878-19801923)
chr8 (468-519)||(41681901-41681952)
chr8 (468-519)||(21580457-21580509)
chr8 (468-511)||(20179770-20179813)
chr8 (468-519)||(29764050-29764101)
chr8 (468-511)||(39695853-39695896)
chr8 (468-511)||(42266832-42266875)
chr8 (468-520)||(23669179-23669231)
chr8 (468-511)||(18303091-18303134)
chr8 (468-511)||(19127724-19127767)
chr8 (468-519)||(22206941-22206992)
chr8 (468-511)||(22259602-22259645)
chr8 (468-502)||(20046677-20046711)
chr8 (468-502)||(26219347-26219381)
chr8 (468-497)||(5083567-5083596)
chr8 (500-533)||(27472955-27472988)
[»] scaffold0035 (2 HSPs)
scaffold0035 (468-524)||(106052-106108)
scaffold0035 (491-531)||(106012-106051)
[»] scaffold0371 (1 HSPs)
scaffold0371 (468-519)||(11569-11620)
[»] scaffold0019 (1 HSPs)
scaffold0019 (468-519)||(26058-26109)
[»] scaffold0278 (1 HSPs)
scaffold0278 (492-535)||(7079-7122)
[»] scaffold0077 (1 HSPs)
scaffold0077 (468-519)||(13838-13889)
[»] chr5 (14 HSPs)
chr5 (468-519)||(12122724-12122775)
chr5 (471-519)||(31454653-31454701)
chr5 (471-519)||(31455266-31455314)
chr5 (468-519)||(21555606-21555657)
chr5 (470-519)||(36510048-36510097)
chr5 (468-511)||(20565186-20565229)
chr5 (468-519)||(21558271-21558322)
chr5 (468-511)||(26761195-26761238)
chr5 (468-502)||(16227117-16227151)
chr5 (468-511)||(23202981-23203024)
chr5 (468-498)||(5889766-5889796)
chr5 (468-502)||(17874807-17874841)
chr5 (468-498)||(21742148-21742178)
chr5 (468-502)||(39244744-39244778)
[»] chr3 (24 HSPs)
chr3 (468-519)||(14642788-14642839)
chr3 (468-519)||(6158160-6158211)
chr3 (468-519)||(14153665-14153716)
chr3 (468-519)||(37037618-37037669)
chr3 (468-511)||(53647114-53647157)
chr3 (471-511)||(14251059-14251099)
chr3 (468-511)||(12506915-12506958)
chr3 (468-511)||(12513058-12513101)
chr3 (468-519)||(17043821-17043872)
chr3 (468-511)||(19574684-19574727)
chr3 (468-511)||(35065899-35065942)
chr3 (468-511)||(41173595-41173638)
chr3 (468-511)||(42327557-42327600)
chr3 (468-519)||(50349298-50349349)
chr3 (468-502)||(12269064-12269098)
chr3 (468-508)||(19569559-19569599)
chr3 (468-511)||(9644227-9644270)
chr3 (468-511)||(22307878-22307921)
chr3 (468-502)||(6469656-6469690)
chr3 (468-502)||(15076462-15076496)
chr3 (478-519)||(15017425-15017466)
chr3 (470-511)||(16728059-16728100)
chr3 (468-497)||(45531859-45531888)
chr3 (468-500)||(49390275-49390307)
[»] chr2 (17 HSPs)
chr2 (468-519)||(356763-356814)
chr2 (468-511)||(25085183-25085226)
chr2 (468-518)||(9974651-9974701)
chr2 (151-232)||(31700303-31700384)
chr2 (468-511)||(10897904-10897947)
chr2 (468-511)||(18389536-18389579)
chr2 (468-519)||(22688448-22688499)
chr2 (470-511)||(24782180-24782221)
chr2 (470-519)||(24883187-24883236)
chr2 (479-519)||(24883112-24883152)
chr2 (468-519)||(22500609-22500659)
chr2 (468-519)||(22508543-22508593)
chr2 (474-517)||(23285441-23285484)
chr2 (469-511)||(5032641-5032683)
chr2 (468-502)||(28576734-28576768)
chr2 (468-502)||(45030366-45030400)
chr2 (474-511)||(19357717-19357754)
[»] chr6 (11 HSPs)
chr6 (468-517)||(20734672-20734721)
chr6 (495-535)||(31630798-31630838)
chr6 (492-535)||(31630853-31630896)
chr6 (468-511)||(20412019-20412062)
chr6 (468-511)||(23492503-23492546)
chr6 (468-511)||(23498101-23498144)
chr6 (492-533)||(15874854-15874895)
chr6 (470-511)||(27329143-27329184)
chr6 (470-511)||(27389883-27389924)
chr6 (471-519)||(19830191-19830239)
chr6 (468-511)||(23017431-23017474)
[»] scaffold0630 (1 HSPs)
scaffold0630 (468-519)||(7858-7909)
[»] scaffold0507 (1 HSPs)
scaffold0507 (468-519)||(3200-3251)
[»] scaffold0108 (1 HSPs)
scaffold0108 (469-519)||(5136-5186)
[»] scaffold0170 (1 HSPs)
scaffold0170 (468-517)||(2289-2338)
[»] scaffold0039 (1 HSPs)
scaffold0039 (468-516)||(11108-11156)
[»] scaffold0036 (1 HSPs)
scaffold0036 (467-511)||(78627-78671)
[»] scaffold1815 (1 HSPs)
scaffold1815 (468-519)||(791-842)
[»] scaffold0462 (2 HSPs)
scaffold0462 (468-511)||(179-222)
scaffold0462 (468-511)||(5685-5728)
[»] scaffold0220 (2 HSPs)
scaffold0220 (468-519)||(15485-15536)
scaffold0220 (471-516)||(3223-3268)
[»] scaffold0042 (1 HSPs)
scaffold0042 (468-511)||(47765-47808)
[»] scaffold0001 (2 HSPs)
scaffold0001 (468-511)||(31600-31643)
scaffold0001 (468-511)||(36907-36950)
[»] scaffold0375 (1 HSPs)
scaffold0375 (469-511)||(9619-9661)
[»] scaffold0195 (1 HSPs)
scaffold0195 (468-502)||(16964-16998)
[»] scaffold0450 (1 HSPs)
scaffold0450 (470-511)||(13416-13457)
[»] scaffold0328 (1 HSPs)
scaffold0328 (470-511)||(19887-19928)
[»] scaffold0134 (1 HSPs)
scaffold0134 (468-517)||(10460-10509)
[»] scaffold0509 (1 HSPs)
scaffold0509 (471-511)||(10079-10119)
[»] scaffold0737 (1 HSPs)
scaffold0737 (468-511)||(6964-7007)
[»] scaffold0529 (1 HSPs)
scaffold0529 (468-511)||(7079-7122)
[»] scaffold0241 (1 HSPs)
scaffold0241 (468-511)||(1138-1181)
[»] scaffold0218 (1 HSPs)
scaffold0218 (468-519)||(9319-9370)
[»] scaffold0149 (1 HSPs)
scaffold0149 (468-511)||(20421-20464)
[»] scaffold0098 (1 HSPs)
scaffold0098 (468-519)||(38878-38929)
[»] scaffold0056 (1 HSPs)
scaffold0056 (501-535)||(79840-79874)
[»] scaffold0020 (1 HSPs)
scaffold0020 (468-502)||(142254-142288)
[»] scaffold0008 (1 HSPs)
scaffold0008 (468-502)||(71549-71583)
[»] scaffold0107 (2 HSPs)
scaffold0107 (474-510)||(10851-10887)
scaffold0107 (474-510)||(16654-16690)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 154 - 376
Target Start/End: Original strand, 14985782 - 14986004
Alignment:
Q  154 ttgttggaaattattagaaaaaatcccatttgtaacggttaaacatgtgaacaaagagctaaatagtgaagctcataatcttgcttctttagccaagata 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  14985782 ttgttggaaattattagaaaaaatcccatttgtaacggttaaacatgtgaacagagagctaaatagtgaagctcataatcttgcttttttagccaagata 14985881  T
Q  254 gttggtactaagttttggtgggggaatgcctctcgaaaccaagttaatttttctgctgttactactgttgtaagcaatgagcaggccagttcctgtttct 353  Q
    ||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14985882 gttggtactaagttttggttggggaatgcccctccaaaccaagttaatttttctgctgttactactgttgtaagcaatgagcaggccagttcctgtttct 14985981  T
Q  354 aatcaatgaaatctttgaacttc 376  Q
    |||||| ||||||||||||||||    
T  14985982 aatcaacgaaatctttgaacttc 14986004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 14985177 - 14985330
Alignment:
Q  10 agaagcaaagggagttaggtgggctttacaatatgcaacagctcaaggtatccaaagtgtggaagtaattagtgatgcactgggagtagtcaactgtgtc 109  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  14985177 agaagcaatgggagttaggtgggccttataatatgcaacagctcaaggtatccaaagtgtggaagtaaatagtgatgcactgggagtagtcaattgtgtc 14985276  T
Q  110 aacaagaacagtgttgtgctatctattgaacctgtagtttatgattgttggaaa 163  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14985277 aacaagaacagtgttgtgatatctattgaacctgtagtttatgattgttggaaa 14985330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 468 - 535
Target Start/End: Complemental strand, 19857125 - 19857058
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19857125 gtgaagtattaatatttattaatcattgttgtttaagttattatgagatgataaatatgtgttgttat 19857058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 468 - 535
Target Start/End: Complemental strand, 361798 - 361731
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  361798 gtgaaatattaatatttattaatcgttgttgtttaagttattatgaaatgataaatatgtgttgttat 361731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 9637669 - 9637618
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9637669 gtgaagtattaatatttattaatcgttgttgtttatgttattatgagatgat 9637618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 6190171 - 6190126
Alignment:
Q  490 tcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6190171 tcgttgttgtttaagttattatgagatgataaatatgtgttgttat 6190126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 492 - 535
Target Start/End: Complemental strand, 361708 - 361665
Alignment:
Q  492 gttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  361708 gttgttgtttaagttattatgagatgataaatatgtgttgttat 361665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 4859053 - 4859104
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  4859053 gtgaagtattaatatttattaatcgttgttgtttatgttattatgaaatgat 4859104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 33244469 - 33244520
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  33244469 gtgaagtattaatatttattaatcgttgttgtttatgttgttatgagatgat 33244520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 51992335 - 51992284
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  51992335 gtgaagtattaatatttattaatcgttgttgtttatgttgttatgagatgat 51992284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 10357757 - 10357800
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  10357757 gtgaagtattaatatttattaatcgttgttgtttatgttattat 10357800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 16296313 - 16296262
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  16296313 gtgaagtattaatatttattaatcgttgttgtttatgtcgttatgagatgat 16296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 13037042 - 13037093
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||  ||| ||||||||    
T  13037042 gtgaagtattaatatttattaatcgttgttgtttatgtcgttacgagatgat 13037093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 19436000 - 19436051
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||||| |||||||||||||||||||| ||  ||||||||||||    
T  19436000 gtgaagtattaatacttattaatcgttgttgtttatgtcgttatgagatgat 19436051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 19734150 - 19734107
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  19734150 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 19734107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 40229296 - 40229253
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  40229296 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 40229253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 46642411 - 46642377
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||||||||||||||    
T  46642411 gtgaagtattaatatttattaatcgttgttgttta 46642377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 520
Target Start/End: Complemental strand, 33185724 - 33185675
Alignment:
Q  471 aagtattaatatttattaatcgttgttgtttaagttattatgagatgata 520  Q
    ||||||||||||||||||||| |||||||||| ||||||||  |||||||    
T  33185724 aagtattaatatttattaatcattgttgtttatgttattatatgatgata 33185675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 535
Target Start/End: Complemental strand, 361636 - 361600
Alignment:
Q  499 tttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||| |||||||||||||||    
T  361636 tttaagttattatgagatgatgaatatgtgttgttat 361600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 44773613 - 44773647
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  44773613 gtgaagtattaatatttattaatcattgttgttta 44773647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 53 - 272
Target Start/End: Original strand, 5618905 - 5619124
Alignment:
Q  53 caaggtatccaaagtgtggaagtaattagtgatgcactgggagtagtcaactgtgtcaacaagaacagtgttgtgctatctattgaacctgtagtttatg 152  Q
    ||||| |||||||||||| ||||  | |||||||| |||| |||||| ||||||||||||||||||| ||||||  | || ||| | ||| |||| | ||    
T  5618905 caaggaatccaaagtgtgaaagtggtcagtgatgcgctggcagtagttaactgtgtcaacaagaacactgttgtcgtgtccattcagcctatagtgtctg 5619004  T
Q  153 attgttggaaattattagaaaaaatcccatttgtaacggttaaacatgtgaacaaagagctaaatagtgaagctcataatcttgcttctttagccaagat 252  Q
    ||||||||||||||||| | ||||| |||||||||| |||||||||||| |  || ||||| || ||||||||||||||||||||||||||||| ||| |    
T  5619005 attgttggaaattattacagaaaattccatttgtaatggttaaacatgttagtaaggagcttaacagtgaagctcataatcttgcttctttagctaaggt 5619104  T
Q  253 agttggtactaagttttggt 272  Q
    |||||||||||  |||||||    
T  5619105 agttggtactagtttttggt 5619124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 14270612 - 14270679
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14270612 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 14270679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 45848201 - 45848268
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45848201 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 45848268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 468 - 535
Target Start/End: Complemental strand, 8468047 - 8467980
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8468047 gtgaagtattaatatttattaatcgttgttgtttaagttattatgaaatgataaatatgtgttgttat 8467980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 468 - 535
Target Start/End: Complemental strand, 17232172 - 17232105
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17232172 gtgaagtattaatatttattaattgttgttgtttaagttattatgagatgataaatatgtgttgttat 17232105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 12757377 - 12757428
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12757377 gtgaagtattaatatttattaatcgttgttgtttatgttattatgagatgat 12757428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 30822092 - 30822143
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30822092 gtgaagtattaatatttattaatcgttgttgtttatgttattatgagatgat 30822143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 470 - 519
Target Start/End: Complemental strand, 16458727 - 16458678
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  16458727 gaagtattaatatttattaatcgttgttgtttatgttattatgaaatgat 16458678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 18876125 - 18876176
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  18876125 gtgaagtattaatatttattaatcgttgttgtttatgtcgttatgagatgat 18876176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 36686477 - 36686528
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  36686477 gtgaagtattaatatttattaatcgttgttgtttatgtcgttatgagatgat 36686528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 48811613 - 48811562
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||    
T  48811613 gtgaagtattaatatttattaatcttggttgtttatgttattatgagatgat 48811562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 470 - 520
Target Start/End: Original strand, 43278022 - 43278072
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattatgagatgata 520  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  43278022 gaagtattaatatttattaatcgttgttgtttatgtcgttatgagatgata 43278072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 11066202 - 11066159
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  11066202 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 11066159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 12371078 - 12371035
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  12371078 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 12371035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 14220328 - 14220371
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  14220328 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 14220371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 15120593 - 15120636
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  15120593 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 15120636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 44373749 - 44373706
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  44373749 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 44373706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 44382614 - 44382571
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  44382614 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 44382571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 6170709 - 6170743
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||||||||||||||    
T  6170709 gtgaagtattaatatttattaatcgttgttgttta 6170743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 15439292 - 15439258
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||||||||||||||    
T  15439292 gtgaagtattaatatttattaatcgttgttgttta 15439258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 511
Target Start/End: Complemental strand, 19281852 - 19281811
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  19281852 gaagtattaatatttattaatcgttgttgtttatgttgttat 19281811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 14162161 - 14162212
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||| |||||||||||||||||||||||||||||  |  ||||||||||||    
T  14162161 gtgaaatattaatatttattaatcgttgttgtttatatcgttatgagatgat 14162212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 32434907 - 32434950
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||    
T  32434907 gtgaagtattaatatttattaatcgtttttgtttatgttgttat 32434950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 47093941 - 47093898
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  47093941 gtgaaatattaatatttattaatcgttgttgtttatgttgttat 47093898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 10064304 - 10064338
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  10064304 gtgaagtattaatatttattaatcattgttgttta 10064338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 18423351 - 18423317
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  18423351 gtgaagtattaatatttattaatcattgttgttta 18423317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 497
Target Start/End: Original strand, 13699955 - 13699984
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgtt 497  Q
    ||||||||||||||||||||||||||||||    
T  13699955 gtgaagtattaatatttattaatcgttgtt 13699984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 37785594 - 37785635
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||| |||||||||||||||||||||| ||| ||||    
T  37785594 gaagtattaacatttattaatcgttgttgtttatgttgttat 37785635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 468 - 543
Target Start/End: Original strand, 46383127 - 46383203
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat-tgatgatg 543  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46383127 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttatatgatgatg 46383203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 41306165 - 41306232
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41306165 gtgaagtattaatatttattaattgttgttgtttaagttattatgagatgataaatatgtgttgttat 41306232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 20587508 - 20587457
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  20587508 gtgaagtattaatatttattaatcgttgttgtttatgttattatgaggtgat 20587457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 20592046 - 20591995
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  20592046 gtgaagtattaatatttattaatcgttgttgtttatgttattatgaggtgat 20591995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 519
Target Start/End: Original strand, 16059607 - 16059656
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  16059607 gaagtattaatatttattaatcgttgttgtttatgtcgttatgagatgat 16059656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 7053281 - 7053332
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||||||||||||||| |||||||||| ||  ||||||||||||    
T  7053281 gtgaagtattaatatttattaatcattgttgtttatgtcgttatgagatgat 7053332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 24723856 - 24723899
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  24723856 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 24723899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 38888349 - 38888392
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  38888349 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 38888392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 41227969 - 41228012
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  41227969 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 41228012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 1642296 - 1642253
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||    
T  1642296 gtgaagtattaatattttttaatcgttgttgtttatgttgttat 1642253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 20634850 - 20634893
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||    
T  20634850 gtgaagtattaatatttattaatctttgttgtttatgttgttat 20634893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 8277192 - 8277226
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  8277192 gtgaagtattaatatttattaatcattgttgttta 8277226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 498
Target Start/End: Original strand, 28195056 - 28195086
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttg 498  Q
    |||||||||||||||||||||||||||||||    
T  28195056 gtgaagtattaatatttattaatcgttgttg 28195086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 511
Target Start/End: Complemental strand, 51475826 - 51475785
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||| |||||||||||||||||||||| ||| ||||    
T  51475826 gaagtattaacatttattaatcgttgttgtttatgttgttat 51475785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 44362 - 44429
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44362 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 44429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 1323655 - 1323722
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1323655 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 1323722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 38550563 - 38550630
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38550563 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 38550630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 13428620 - 13428687
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13428620 gtgaaatattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 13428687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 468 - 535
Target Start/End: Original strand, 27472860 - 27472925
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  27472860 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatg--acatatgtgttgttat 27472925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 490 - 535
Target Start/End: Original strand, 19801878 - 19801923
Alignment:
Q  490 tcgttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  19801878 tcgttgttgtttaagttattatgagatgataaatatgtgttgttat 19801923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 41681901 - 41681952
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  41681901 gtgaaatattaatatttattaatcgtggttgtttatgttattatgagatgat 41681952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 21580457 - 21580509
Alignment:
Q  468 gtgaagtattaatattt-attaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  21580457 gtgaagtattaatattttattaatcgtggttgtttatgttattatgagatgat 21580509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 20179770 - 20179813
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  20179770 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 20179813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 29764050 - 29764101
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||| |||||    
T  29764050 gtgaagtattaatatttattaatcgttgttgtttatgtcgttatgatatgat 29764101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 39695853 - 39695896
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  39695853 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 39695896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 42266832 - 42266875
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  42266832 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 42266875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 520
Target Start/End: Complemental strand, 23669231 - 23669179
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgata 520  Q
    ||||| ||||||||||||||||||||||||||||| ||  |||| ||||||||    
T  23669231 gtgaaatattaatatttattaatcgttgttgtttatgtcgttataagatgata 23669179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 18303091 - 18303134
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||    
T  18303091 gtgaagtattaatgtttatcaatcgttgttgtttatgttattat 18303134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 19127767 - 19127724
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  19127767 gtgaaatattaatatttattaatcgttgttgtttatgttgttat 19127724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 22206992 - 22206941
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||| ||||||||||| ||  |||| |||||||    
T  22206992 gtgaagtattaatatttattaattgttgttgtttatgtcgttataagatgat 22206941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 22259602 - 22259645
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||    
T  22259602 gtgaagtattaatatttattaatcattgttgtttatgttgttat 22259645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 20046677 - 20046711
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  20046677 gtgaagtattaatatttattaatcattgttgttta 20046711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 26219381 - 26219347
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  26219381 gtgaagtattaatatttattaatcattgttgttta 26219347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 497
Target Start/End: Original strand, 5083567 - 5083596
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgtt 497  Q
    ||||||||||||||||||||||||||||||    
T  5083567 gtgaagtattaatatttattaatcgttgtt 5083596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 533
Target Start/End: Original strand, 27472955 - 27472988
Alignment:
Q  500 ttaagttattatgagatgataaatatgtgttgtt 533  Q
    |||||||||||||||||||| |||||||||||||    
T  27472955 ttaagttattatgagatgatgaatatgtgttgtt 27472988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 468 - 524
Target Start/End: Complemental strand, 106108 - 106052
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgataaata 524  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  106108 gtgaagtattaatatttattaattgttgttgtttaagttattatgagatgataaata 106052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 106051 - 106012
Alignment:
Q  491 cgttgttgtttaagttattatgagatgataaatatgtgttg 531  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  106051 cgttgttgtt-aagttattatgagatgatgaatatgtgttg 106012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 11569 - 11620
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11569 gtgaagtattaatatttattaatcgttgttgtttatgttattatgagatgat 11620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 26058 - 26109
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26058 gtgaagtattaatatttattaatcgttgttgtttatgttattatgagatgat 26109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 492 - 535
Target Start/End: Complemental strand, 7122 - 7079
Alignment:
Q  492 gttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7122 gttgttgtttaagttattatgagatgataaatatgtgttgttat 7079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 13889 - 13838
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  13889 gtgaagtattaatatttattaatcgttgttgtttatgtcattatgagatgat 13838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 12122724 - 12122775
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  12122724 gtgaagtattaatatttattaatcgttgttgtttatgtcattatgagatgat 12122775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 31454701 - 31454653
Alignment:
Q  471 aagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  31454701 aagtattaatatttattaatcgtggttgtttatgttattatgagatgat 31454653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 471 - 519
Target Start/End: Complemental strand, 31455314 - 31455266
Alignment:
Q  471 aagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  31455314 aagtattaatatttattaatcgtggttgtttatgttattatgagatgat 31455266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 21555606 - 21555657
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  21555606 gtgaagtattaatatttattaatcgttgttgtttatgtcgttatgagatgat 21555657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 519
Target Start/End: Original strand, 36510048 - 36510097
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  36510048 gaagtattaatatttattaatcgttgttgtttatgtcgttatgagatgat 36510097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 20565229 - 20565186
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  20565229 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 20565186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 21558271 - 21558322
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||||||    
T  21558271 gtgaagtattaatatttatcaatcgttgttgtttatgtcgttatgagatgat 21558322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 26761238 - 26761195
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  26761238 gtgaagtattaatatttattaatcgttgttgtttatgtttttat 26761195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 16227151 - 16227117
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||||||||||||||    
T  16227151 gtgaagtattaatatttattaatcgttgttgttta 16227117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 23202981 - 23203024
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||    
T  23202981 gtgaagtattaatattttttaatcgttgttgtttatgttgttat 23203024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 498
Target Start/End: Original strand, 5889766 - 5889796
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttg 498  Q
    |||||||||||||||||||||||||||||||    
T  5889766 gtgaagtattaatatttattaatcgttgttg 5889796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 17874841 - 17874807
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||||| ||||||||    
T  17874841 gtgaagtattaatatttattaatcgtggttgttta 17874807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 498
Target Start/End: Original strand, 21742148 - 21742178
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttg 498  Q
    |||||||||||||||||||||||||||||||    
T  21742148 gtgaagtattaatatttattaatcgttgttg 21742178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 39244778 - 39244744
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  39244778 gtgaagtattaatatttattaatcattgttgttta 39244744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 14642788 - 14642839
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  14642788 gtgaagtattaatatttattaatcgttgttgtttatgttgttatgagatgat 14642839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 6158211 - 6158160
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  6158211 gtgatgtattaatatttattaatcgtggttgtttatgttattatgagatgat 6158160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 14153665 - 14153716
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  14153665 gtgaagtattaatatttattaatcggtgttgtttatgttgttatgagatgat 14153716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 37037669 - 37037618
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  37037669 gtgaagtattaatatttattaatcgttgttgtttatgtcgttatgagatgat 37037618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 53647114 - 53647157
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  53647114 gtgaagtattaatatttattaatcgttgttgtttatgttattat 53647157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 511
Target Start/End: Original strand, 14251059 - 14251099
Alignment:
Q  471 aagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  14251059 aagtattaatatttattaatcgttgttgtttatgttattat 14251099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 12506915 - 12506958
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  12506915 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 12506958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 12513058 - 12513101
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  12513058 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 12513101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 17043872 - 17043821
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||| ||||||||||| ||| |||| |||||||    
T  17043872 gtgaagtattaatatttattaattgttgttgtttatgttgttatcagatgat 17043821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 19574727 - 19574684
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  19574727 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 19574684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 35065899 - 35065942
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  35065899 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 35065942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 41173595 - 41173638
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  41173595 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 41173638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 42327557 - 42327600
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  42327557 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 42327600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 50349298 - 50349349
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||||| |||||||||||||||||||| ||  ||||||||||||    
T  50349298 gtgaagtattaatacttattaatcgttgttgtttatgtcgttatgagatgat 50349349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 12269098 - 12269064
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||||||||||||||    
T  12269098 gtgaagtattaatatttattaatcgttgttgttta 12269064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 508
Target Start/End: Original strand, 19569559 - 19569599
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttat 508  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  19569559 gtgaaatattaatatttattaatcgttgttgtttatgttat 19569599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 9644270 - 9644227
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||    
T  9644270 gtgaagtattaatatttattaatcattgttgtttatgttgttat 9644227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 22307878 - 22307921
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||    
T  22307878 gtgaagtattaatatttattaatcgttattgtttatgttgttat 22307921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 6469656 - 6469690
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  6469656 gtgaagtattaatatttattaatcattgttgttta 6469690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 15076462 - 15076496
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  15076462 gtgaagtattaatatttattaatcattgttgttta 15076496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 519
Target Start/End: Complemental strand, 15017466 - 15017425
Alignment:
Q  478 aatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||| ||| |||| |||||||    
T  15017466 aatatttattaatcgttgttgtttatgttgttataagatgat 15017425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 511
Target Start/End: Complemental strand, 16728100 - 16728059
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||| |||||||||||||||||||||| ||| ||||    
T  16728100 gaagtattaacatttattaatcgttgttgtttatgttgttat 16728059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 497
Target Start/End: Original strand, 45531859 - 45531888
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgtt 497  Q
    ||||||||||||||||||||||||||||||    
T  45531859 gtgaagtattaatatttattaatcgttgtt 45531888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 500
Target Start/End: Original strand, 49390275 - 49390307
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtt 500  Q
    |||||||||||||||||||||||| ||||||||    
T  49390275 gtgaagtattaatatttattaatcattgttgtt 49390307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 356814 - 356763
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  356814 gtgaagtattaatatttattaatcgtggttgtttatgttattatgagatgat 356763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 25085226 - 25085183
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  25085226 gtgaagtattaatatttattaatcgttgttgtttatgttattat 25085183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 9974701 - 9974651
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatga 518  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  9974701 gtgaagtattaatatttattaatcgtggttgtttatattattatgagatga 9974651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 31700303 - 31700384
Alignment:
Q  151 tgattgttggaaattattagaaaaaatcccatttgtaacggttaaacatgtgaacaaagagctaaatagtgaagctcataat 232  Q
    |||||||||||| ||| ||||| ||||||||||||||| |||||| ||||| |  | |||||| |||| |||||||||||||    
T  31700303 tgattgttggaatttaatagaacaaatcccatttgtaatggttaatcatgttagtagagagctgaatattgaagctcataat 31700384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 10897904 - 10897947
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  10897904 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 10897947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 18389536 - 18389579
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  18389536 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 18389579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 22688499 - 22688448
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| |||||||    
T  22688499 gtgaaatattaatatttattaatcgttgttgtttatgttgttataagatgat 22688448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 24782180 - 24782221
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  24782180 gaagtattaatatttattaatcgttgttgtttatgttgttat 24782221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 519
Target Start/End: Complemental strand, 24883236 - 24883187
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||| ||||    
T  24883236 gaagtattaatatttattaatcgttgttgtttatgtcgttatgaggtgat 24883187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 24883152 - 24883112
Alignment:
Q  479 atatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  24883152 atatttattaatcgtggttgtttatgttattatgagatgat 24883112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 22500659 - 22500609
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||||||||||||||||| |||| |||  |||||||||||||||    
T  22500659 gtgaagtattaatatttattaatcgtggttg-ttatattattatgagatgat 22500609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 22508593 - 22508543
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||||||||||||||||| |||| |||  |||||||||||||||    
T  22508593 gtgaagtattaatatttattaatcgtggttg-ttatattattatgagatgat 22508543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 517
Target Start/End: Complemental strand, 23285484 - 23285441
Alignment:
Q  474 tattaatatttattaatcgttgttgtttaagttattatgagatg 517  Q
    |||||||||||||||||||||||||||||  || ||||||||||    
T  23285484 tattaatatttattaatcgttgttgtttatattgttatgagatg 23285441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 511
Target Start/End: Original strand, 5032641 - 5032683
Alignment:
Q  469 tgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||    
T  5032641 tgaagtattaatatttgttaatcgttgttgtttatgttgttat 5032683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 28576768 - 28576734
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  28576768 gtgaagtattaatatttattaatcattgttgttta 28576734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Original strand, 45030366 - 45030400
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  45030366 gtgaagtattaatatttattaatcattgttgttta 45030400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 19357754 - 19357717
Alignment:
Q  474 tattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  19357754 tattaatatttattaatcgttgttgtttatgttgttat 19357717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 468 - 517
Target Start/End: Original strand, 20734672 - 20734721
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatg 517  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  20734672 gtgaagtattaatatttattaatcgtggttgtttatgttattatgagatg 20734721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 31630798 - 31630838
Alignment:
Q  495 gttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31630798 gttgtttaagttattatgagatgataaatatgtgttgttat 31630838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 492 - 535
Target Start/End: Original strand, 31630853 - 31630896
Alignment:
Q  492 gttgttgtttaagttattatgagatgataaatatgtgttgttat 535  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  31630853 gttgttgtttaagttattatgagatgatgaatatgtgttgttat 31630896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 20412019 - 20412062
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  20412019 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 20412062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 23492503 - 23492546
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  23492503 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 23492546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 23498101 - 23498144
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  23498101 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 23498144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 492 - 533
Target Start/End: Complemental strand, 15874895 - 15874854
Alignment:
Q  492 gttgttgtttaagttattatgagatgataaatatgtgttgtt 533  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  15874895 gttgttgtttatattattatgagatgataaatatgtgttgtt 15874854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 27329143 - 27329184
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  27329143 gaagtattaatatttattaatcgttgttgtttatgttgttat 27329184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 27389883 - 27389924
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  27389883 gaagtattaatatttattaatcgttgttgtttatgttgttat 27389924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 519
Target Start/End: Original strand, 19830191 - 19830239
Alignment:
Q  471 aagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||||||||||||||||||||||| ||  |||| |||||||    
T  19830191 aagtattaatatttattaatcgttgttgtttatgtggttataagatgat 19830239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 23017431 - 23017474
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||| |||||||||||||||||||||||||||| ||| ||||    
T  23017431 gtgaagaattaatatttattaatcgttgttgtttatgttgttat 23017474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 7909 - 7858
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  7909 gtgaagtattaatatttattaatcgttgttgtttatgttgttataagatgat 7858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0507 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 3200 - 3251
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  3200 gtgaagtattaacatttattaatcgtggttgtttatgttattatgagatgat 3251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 469 - 519
Target Start/End: Complemental strand, 5186 - 5136
Alignment:
Q  469 tgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  5186 tgaagtattaatatttattaatcgatgttgtttatgtcattatgagatgat 5136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 468 - 517
Target Start/End: Complemental strand, 2338 - 2289
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatg 517  Q
    ||||||||||||||||||||||||||||||||||| ||  ||||||||||    
T  2338 gtgaagtattaatatttattaatcgttgttgtttatgtcgttatgagatg 2289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 11108 - 11156
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagat 516  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  11108 gtgaagtattaatatttattaatcgttgttgtttatgtttttataagat 11156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 511
Target Start/End: Original strand, 78627 - 78671
Alignment:
Q  467 cgtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  78627 cgtgaagtattaatatttattaatcgttgttgtttatgttgttat 78671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1815 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1815
Description:

Target: scaffold1815; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 842 - 791
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    |||||||||||||||||||||||| |||||||||| ||  ||||||||||||    
T  842 gtgaagtattaatatttattaatcattgttgtttatgtcgttatgagatgat 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 222 - 179
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  222 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 5728 - 5685
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  5728 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 5685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 15536 - 15485
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  15536 gtgaagtattaatatttattaattgttgttgtttatgtcgttatgagatgat 15485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 3268 - 3223
Alignment:
Q  471 aagtattaatatttattaatcgttgttgtttaagttattatgagat 516  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||    
T  3268 aagtattaatatttattaatcgttgttgtttatgtccttatgagat 3223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 47765 - 47808
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  47765 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 47808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 31643 - 31600
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  31643 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 31600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 36950 - 36907
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  36950 gtgaagtattaatatttattaatcgttgttgtttatgttgttat 36907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 511
Target Start/End: Original strand, 9619 - 9661
Alignment:
Q  469 tgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  9619 tgaagtattaatatttattaatcgttgttgtttatgttgttat 9661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 16998 - 16964
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||||||||||||||    
T  16998 gtgaagtattaatatttattaatcgttgttgttta 16964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 511
Target Start/End: Complemental strand, 13457 - 13416
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  13457 gaagtattaatatttattaatcgttgttgtttatgttgttat 13416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 511
Target Start/End: Original strand, 19887 - 19928
Alignment:
Q  470 gaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  19887 gaagtattaatatttattaatcgttgttgtttatgttgttat 19928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 468 - 517
Target Start/End: Original strand, 10460 - 10509
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatg 517  Q
    ||||| ||||||||||||||||||||||||||||| ||  ||||||||||    
T  10460 gtgaaatattaatatttattaatcgttgttgtttatgtcgttatgagatg 10509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0509 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0509
Description:

Target: scaffold0509; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 511
Target Start/End: Original strand, 10079 - 10119
Alignment:
Q  471 aagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  10079 aagtattaatatttattaatcgttgttgtttatgttgttat 10119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Original strand, 6964 - 7007
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||    
T  6964 gtgaagtattaatatttattaatcattgttgtttatgttgttat 7007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 7122 - 7079
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||    
T  7122 gtgaagttttaatatttattaatcgttgttgtttatgttgttat 7079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 1181 - 1138
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  1181 gtgaaatattaatatttattaatcgttgttgtttatgttgttat 1138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Original strand, 9319 - 9370
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||| | ||| ||| |||| |||||||    
T  9319 gtgaagtattaatatttattaatcgttgtcgattatgttgttataagatgat 9370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 20464 - 20421
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattat 511  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||    
T  20464 gtgaagtattaatatttattaatcattgttgtttatgttgttat 20421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 38929 - 38878
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgtttaagttattatgagatgat 519  Q
    ||||||||||||||||||||||||||||||| ||  ||  ||||||||||||    
T  38929 gtgaagtattaatatttattaatcgttgttgattgtgtcgttatgagatgat 38878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 535
Target Start/End: Original strand, 79840 - 79874
Alignment:
Q  501 taagttattatgagatgataaatatgtgttgttat 535  Q
    ||||||||||||||||||||||||||||| |||||    
T  79840 taagttattatgagatgataaatatgtgtggttat 79874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 142288 - 142254
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    ||||||||||||||||||||||||||||| |||||    
T  142288 gtgaagtattaatatttattaatcgttgtcgttta 142254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 502
Target Start/End: Complemental strand, 71583 - 71549
Alignment:
Q  468 gtgaagtattaatatttattaatcgttgttgttta 502  Q
    |||||||||||||||||||||||| ||||||||||    
T  71583 gtgaagtattaatatttattaatcattgttgttta 71549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 510
Target Start/End: Original strand, 10851 - 10887
Alignment:
Q  474 tattaatatttattaatcgttgttgtttaagttatta 510  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  10851 tattaatatttattaatcgttgtggtttatgttatta 10887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 510
Target Start/End: Original strand, 16654 - 16690
Alignment:
Q  474 tattaatatttattaatcgttgttgtttaagttatta 510  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  16654 tattaatatttattaatcgttgtggtttatgttatta 16690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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