View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9648_low_12 (Length: 267)

Name: NF9648_low_12
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9648_low_12
NF9648_low_12
[»] chr3 (12 HSPs)
chr3 (1-217)||(23467158-23467374)
chr3 (115-217)||(23427143-23427245)
chr3 (92-217)||(23400736-23400861)
chr3 (92-217)||(23452689-23452814)
chr3 (92-185)||(23350472-23350565)
chr3 (1-61)||(23427059-23427118)
chr3 (92-208)||(23470907-23471023)
chr3 (92-203)||(23403193-23403301)
chr3 (92-217)||(23438407-23438532)
chr3 (92-203)||(23461797-23461905)
chr3 (115-217)||(23382057-23382156)
chr3 (94-162)||(23433899-23433967)
[»] scaffold0201 (1 HSPs)
scaffold0201 (92-217)||(9969-10091)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 23467158 - 23467374
Alignment:
Q  1 agactaagaaggagaagatgaaaagaaactagctacaaaattaaaacatgtgttttcattgattaattaaattcctaaagatacaacacacttatcccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23467158 agactaagaaggagaagatgaaaagaaactagctacaaaattaaaacatatgttttcattgattaattacattcctaaagatacaacacacttatcccct 23467257  T
Q  101 ctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgttgtgaacatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23467258 ctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataaatttcactatcttgtctgttgtgaacatg 23467357  T
Q  201 ccagcataccagtacat 217  Q
    |||||||||||||||||    
T  23467358 ccagcataccagtacat 23467374  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 23427143 - 23427245
Alignment:
Q  115 aattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgttgtgaacatgccagcataccagta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  23427143 aattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataactttcactatattgtctgttgtgaacatgccagcataccagta 23427242  T
Q  215 cat 217  Q
    |||    
T  23427243 cat 23427245  T

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Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 92 - 217
Target Start/End: Original strand, 23400736 - 23400861
Alignment:
Q  92 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 191  Q
    |||||||||| ||||| |||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||    
T  23400736 ttatcccctccgttgaccaccgcaatagtttcttgtgaccttgaagtagaaactgaaatgataagttgcaaaaatcataacttccactatcttgtctgtt 23400835  T
Q  192 gtgaacatgccagcataccagtacat 217  Q
    |||||||||| ||||||||| |||||    
T  23400836 gtgaacatgctagcataccaatacat 23400861  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 217
Target Start/End: Original strand, 23452689 - 23452814
Alignment:
Q  92 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 191  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||| ||||||||| |||| | || || | |||||| ||||    
T  23452689 ttatcccctctgttgaccaccacaattgttccttttgaccttgaagtaggaactgaaatgataggttgcaaaagtcatgacttccagtttcttgtttgtt 23452788  T
Q  192 gtgaacatgccagcataccagtacat 217  Q
    || | ||| |||||||| || |||||    
T  23452789 gtaaccattccagcatatcaatacat 23452814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 23350472 - 23350565
Alignment:
Q  92 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttg 185  Q
    |||||||||| || || |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||| || |||| |||||    
T  23350472 ttatcccctcagtcgaccaccacaatttttccttgtgaccttgaagtataaattgaaatgataggttgcaaaagtcataacttccactttcttg 23350565  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23427059 - 23427118
Alignment:
Q  1 agactaagaaggagaagatgaaaagaaactagctacaaaattaaaacatgtgttttcattg 61  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  23427059 agactaagaaggagaagatgaaaggaa-ctagctacaaaattaaaacatgtgttttcattg 23427118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 23470907 - 23471023
Alignment:
Q  92 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 191  Q
    ||||||||||  |||| ||||  |||| ||| ||| ||||||||||||  |||||||||||||||||||||| ||||||| || || | |||||||||||    
T  23470907 ttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatcataacttccattttcttgtctgtt 23471006  T
Q  192 gtgaacatgccagcata 208  Q
    || | ||||||| ||||    
T  23471007 gtaaccatgccaacata 23471023  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 23403193 - 23403301
Alignment:
Q  92 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 191  Q
    |||||||||||||||| ||||||| || ||| ||| ||||||||||||  |||||||||||||||||   | |||||||| || |||| |||||| ||||    
T  23403193 ttatcccctctgttgaccaccacagttcttcattgggaccttgaagtatgaattgaaatgataagtt---acaatcataacttccactttcttgtatgtt 23403289  T
Q  192 gtgaacatgcca 203  Q
    || | |||||||    
T  23403290 gtaaccatgcca 23403301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 217
Target Start/End: Original strand, 23438407 - 23438532
Alignment:
Q  92 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 191  Q
    ||||||||||  |||| |||||||||| ||| ||| || ||||| |||  |||||||||||||||||| ||| ||||| | || || | |||||||||||    
T  23438407 ttatcccctcctttgaccaccacaattcttcattgggatcttgatgtatgaattgaaatgataagttgtaaatatcattacttccattttcttgtctgtt 23438506  T
Q  192 gtgaacatgccagcataccagtacat 217  Q
    || | |||||||||||| || |||||    
T  23438507 gtaaccatgccagcatatcaatacat 23438532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 23461797 - 23461905
Alignment:
Q  92 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 191  Q
    |||||||||||||||| |||||||||| ||| ||| ||||||||||||  |||| ||||||||||||   | |||||||| || |||| |||||| ||||    
T  23461797 ttatcccctctgttgaccaccacaattcttcattgggaccttgaagtatgaatttaaatgataagtt---acaatcataacttccactttcttgtatgtt 23461893  T
Q  192 gtgaacatgcca 203  Q
    || | |||||||    
T  23461894 gtaaccatgcca 23461905  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 23382057 - 23382156
Alignment:
Q  115 aattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgttgtgaacatgccagcataccagta 214  Q
    |||| ||| ||| ||||||||||||  |||||||||||||||||   | |||||||| || |||| |||||| |||||| | ||||||| |||| || ||    
T  23382057 aattcttcattgggaccttgaagtatgaattgaaatgataagtt---acaatcataacttccactttcttgtatgttgtaaccatgccaccatatcaata 23382153  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 23433899 - 23433967
Alignment:
Q  94 atcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaa 162  Q
    |||||||||||||| |||||||||| ||| ||| || ||||| | |  ||||||||||||| |||||||    
T  23433899 atcccctctgttgaccaccacaattcttcattgagatcttgatgcatgaattgaaatgataggttgcaa 23433967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 217
Target Start/End: Original strand, 9969 - 10091
Alignment:
Q  92 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 191  Q
    |||||||||||||||| |||||||||| ||| ||| ||||||||||||  |||| ||||||||||||   | |||||||| || || | |||||||| ||    
T  9969 ttatcccctctgttgaccaccacaattcttcattgggaccttgaagtatgaatttaaatgataagtt---acaatcataacttccattttcttgtctatt 10065  T
Q  192 gtgaacatgccagcataccagtacat 217  Q
    || | |||||||||||| || |||||    
T  10066 gtaaccatgccagcatatcaatacat 10091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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