View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9648_low_13 (Length: 261)
Name: NF9648_low_13
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9648_low_13 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 26121560 - 26121319
Alignment:
| Q |
20 |
gtataaatgtatgcttgtagttcaatcaaaccctacataaccagaacaaaacaaaactaccatctcaaattctcaatatcagtctttgaggtagtggtgg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26121560 |
gtataaatgtatgcttgtagttcaatcaaaccctacataaccagaacaaaacaaaattaccatctcaaattctcaatatcagtctttgaggtagtggtgg |
26121461 |
T |
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| Q |
120 |
atacaatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26121460 |
atacaatgattgggctcagagaaagagaaggacgcttgatgaagaacaactctcattctctactcatatcaataatcgttaccactgtaatcattggagt |
26121361 |
T |
|
| Q |
220 |
tcttattggatgcatcttacttttctattttcctaatgactt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26121360 |
tcttattggatgcatcttacttttctattttcctaatgactt |
26121319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 47 - 261
Target Start/End: Complemental strand, 26085661 - 26085455
Alignment:
| Q |
47 |
aaaccctacataaccagaacaaaacaaaactaccatctcaaattctcaatatcagtctttgaggtagtggtggatacaatgattgggctcagagaaagag |
146 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||| | |||||||||||| | ||||||||||||||||||| || ||||||||||| |
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| T |
26085661 |
aaaccctatataaccagaacaaaacaaaactaccatttcaa--------tctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagag |
26085570 |
T |
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| Q |
147 |
aaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttcttattggatgcatcttacttttcta |
246 |
Q |
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| T |
26085569 |
aaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttgctggatgcatcatagttttcta |
26085470 |
T |
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| Q |
247 |
ttttcctaatgactt |
261 |
Q |
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||||||||||||||| |
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| T |
26085469 |
ttttcctaatgactt |
26085455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 48 - 261
Target Start/End: Complemental strand, 26111997 - 26111792
Alignment:
| Q |
48 |
aaccctacataaccagaacaaaacaaaactaccatctcaaattctcaatatcagtctttgaggtagtggtggatacaatgattgggctcagagaaagaga |
147 |
Q |
| |
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||||||| |||||||||||||||||||||| |||| |||| | |||||||||||| | ||||||||||||||||||| || |||||||||||| |
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| T |
26111997 |
aaccctatataaccagaacaaaacaaaacttccatttcaa--------tctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagaga |
26111906 |
T |
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| Q |
148 |
aggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttcttattggatgcatcttacttttctat |
247 |
Q |
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||||| ||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||| | |
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| T |
26111905 |
aggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttattggatgcatcatagttttcttt |
26111806 |
T |
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| Q |
248 |
tttcctaatgactt |
261 |
Q |
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|||||||||||||| |
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| T |
26111805 |
tttcctaatgactt |
26111792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 47 - 261
Target Start/End: Complemental strand, 26056424 - 26056218
Alignment:
| Q |
47 |
aaaccctacataaccagaacaaaacaaaactaccatctcaaattctcaatatcagtctttgaggtagtggtggatacaatgattgggctcagagaaagag |
146 |
Q |
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|||||||| |||||||||||||||||||||| |||| |||| | |||||||||||| | ||||||||||||||||||| || ||||||||||| |
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| T |
26056424 |
aaaccctatataaccagaacaaaacaaaacttccatttcaa--------tctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagag |
26056333 |
T |
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| Q |
147 |
aaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttcttattggatgcatcttacttttcta |
246 |
Q |
| |
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|||||| |||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
26056332 |
aaggacccttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttactggatgcatcatagttttctt |
26056233 |
T |
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| Q |
247 |
ttttcctaatgactt |
261 |
Q |
| |
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||||||||| ||||| |
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| T |
26056232 |
ttttcctaaagactt |
26056218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 47 - 261
Target Start/End: Complemental strand, 26068086 - 26067880
Alignment:
| Q |
47 |
aaaccctacataaccagaacaaaacaaaactaccatctcaaattctcaatatcagtctttgaggtagtggtggatacaatgattgggctcagagaaagag |
146 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||| |||| | |||||||||||| | ||||||||||||||||||| || ||||||||||| |
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| T |
26068086 |
aaaccctatataaccagaacaaaacaaaacttccatttcaa--------tctcagtctttgagttggtggtggatacaatgattgagcgcagagaaagag |
26067995 |
T |
|
| Q |
147 |
aaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttcttattggatgcatcttacttttcta |
246 |
Q |
| |
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|||||| ||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
26067994 |
aaggacctttgatgaagaacagccctcaatctctactcatatcaaggatcattaccactgtaatcattggagttcttactggatgcatcatagttttctt |
26067895 |
T |
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| Q |
247 |
ttttcctaatgactt |
261 |
Q |
| |
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||||||||| ||||| |
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| T |
26067894 |
ttttcctaaagactt |
26067880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 48 - 261
Target Start/End: Complemental strand, 26128951 - 26128746
Alignment:
| Q |
48 |
aaccctacataaccagaacaaaacaaaactaccatctcaaattctcaatatcagtctttgaggtagtggtggatacaatgattgggctcagagaaagaga |
147 |
Q |
| |
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||||||| ||||||||||| |||||| |||||||| |||| ||||||| ||||||||| ||||||||||||||||||| || |||||||||||| |
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| T |
26128951 |
aaccctatataaccagaactaaacaatactaccatttcaa--tctcaat------ctttgaggtggtggtggatacaatgattgagcacagagaaagaga |
26128860 |
T |
|
| Q |
148 |
aggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttaccactgtaatcattggagttcttattggatgcatcttacttttctat |
247 |
Q |
| |
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||||| ||||||||||||||||||| ||||||| |||||||| || |||||| |||||||||| | |||||||| |||||||||| || |||||| | |
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| T |
26128859 |
aggacccttgatgaagaacaacccttattctctaagcatatcaaagattgttaccgctgtaatcatagtagttcttactggatgcatcatagttttcttt |
26128760 |
T |
|
| Q |
248 |
tttcctaatgactt |
261 |
Q |
| |
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|||||||||||||| |
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| T |
26128759 |
tttcctaatgactt |
26128746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 26038484 - 26038317
Alignment:
| Q |
90 |
tctcaatatcagtctttgaggtagtggtggatacaatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatc |
189 |
Q |
| |
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||||||| |||||||||||||| ||||| | |||||||||||||| ||||||||||||||||| ||| ||| |||||||||| |||||||| || ||| |
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| T |
26038484 |
tctcaatctcagtctttgaggtggtggtagctacaatgattgggcgcagagaaagagaaggacccttaatgcgaaacaaccctcattctctacgcaaatc |
26038385 |
T |
|
| Q |
190 |
aataatggttaccactgtaatcattggagttcttattggatgcatcttacttttctattttcctaatg |
257 |
Q |
| |
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|| || ||||| ||||| | ||||| ||||||||||||||||||||| ||||| ||||||||||| |
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| T |
26038384 |
aaggatcgttactgctgtagtaattggtgttcttattggatgcatcttagctttcttttttcctaatg |
26038317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 26120951 - 26120823
Alignment:
| Q |
104 |
tttgaggtagtggtggatacaatgattgggctcagagaaagagaaggacgcttgatgaagaacaaccctcgttctctactcatatcaataatggttacca |
203 |
Q |
| |
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|||||||| |||||| || |||||||||||| || ||||| |||||||| ||| ||| | ||||| ||| ||||||| || ||||| || | ||||| |
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| T |
26120951 |
tttgaggtggtggtgtattcaatgattgggcgcaaagaaatagaaggacccttaatgcaaaacaatccttaatctctacgcaaatcaaggatcgctacca |
26120852 |
T |
|
| Q |
204 |
ctgtaatcattggagttcttattggatgc |
232 |
Q |
| |
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||||| | || |||||||||||||||||| |
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|
| T |
26120851 |
ctgtagtaatcggagttcttattggatgc |
26120823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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