View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9648_low_17 (Length: 248)
Name: NF9648_low_17
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9648_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 18004805 - 18005008
Alignment:
| Q |
24 |
atgaacaaccttgttaccataagtggtgctagacaactcaagaatattccaattaaggagaaagaagttattggtggaggaaaggtagaagatcaagtta |
123 |
Q |
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|||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18004805 |
atgaccaactttgttaccataagtggttctagacaattcaagaatattccaattaaggagaaagaagttattggtggaggaaaggtagaagatcaagtta |
18004904 |
T |
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| Q |
124 |
atccaagcaagaattataacattgaaaagacacaagtagaaaagaatcaattaccactctttccattaccagctcctccactaccaatccctacactccc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18004905 |
atccaagcaagaattataacattgaaaagacacaagtagataagaatcagttaccaccctttccattaccagctcctccactaccaatccctacactccc |
18005004 |
T |
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| Q |
224 |
tgtc |
227 |
Q |
| |
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|||| |
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| T |
18005005 |
tgtc |
18005008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 20644344 - 20644547
Alignment:
| Q |
24 |
atgaacaaccttgttaccataagtggtgctagacaactcaagaatattccaattaaggagaaagaagttattggtggaggaaaggtagaagatcaagtta |
123 |
Q |
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|||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20644344 |
atgaccaactttgttaccataagtggttctagacaattcaagaatattccaattaaggagaaagaagttattggtggaggaaaggtagaagatcaagtta |
20644443 |
T |
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| Q |
124 |
atccaagcaagaattataacattgaaaagacacaagtagaaaagaatcaattaccactctttccattaccagctcctccactaccaatccctacactccc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20644444 |
atccaagcaagaattataacattgaaaagacacaagtagataagaatcagttaccaccctttccattaccagctcctccactaccaatccctacactccc |
20644543 |
T |
|
| Q |
224 |
tgtc |
227 |
Q |
| |
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|||| |
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|
| T |
20644544 |
tgtc |
20644547 |
T |
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