View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9648_low_24 (Length: 222)
Name: NF9648_low_24
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9648_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 39016973 - 39017175
Alignment:
| Q |
2 |
aataaaacattaatgaccaaccaaaaagtgatatataaaccaaataattaactactttttgacaaacnnnnnnnnn-tgcttgcttgtaaaataaagaat |
100 |
Q |
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| T |
39016973 |
aataaaacattaatgaccaaccaaaaagtgatatataaaccaaataattaactactttttgacaaacaaaaaaaaaatgcttgcttgtaaaataaagaat |
39017072 |
T |
|
| Q |
101 |
gtgcaactaacagacataaagaatgattattgcaaagcacaatgagggagcattaaaatggaagaacaaaggagttaaatgcagacttgaatatgactag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39017073 |
gtgcaactaacagacataaagaatgattattgcaaagcacaatgagggagcattaaaatggaagaacaaaggagttaaatgcagacttgaatatgactag |
39017172 |
T |
|
| Q |
201 |
aac |
203 |
Q |
| |
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||| |
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| T |
39017173 |
aac |
39017175 |
T |
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