View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9648_low_3 (Length: 427)
Name: NF9648_low_3
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9648_low_3 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0323 (2 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0032 (2 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 140 - 407
Target Start/End: Complemental strand, 27611233 - 27610966
Alignment:
| Q |
140 |
tctcctgttgatttgaaatgctctatatatagccctctagaactcaattttacaccgacctcgaaattacttcatagtaaggtttccttcaccgtcttcc |
239 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27611233 |
tctcctgttcatttgaaatgctctatatatagccctttagaactcaattttacaccgaccccaaaattacttcatagtaaggtttccttcaccgtcttcc |
27611134 |
T |
|
| Q |
240 |
tttttgtttcttgtgctagctttttgttcatttctcatgattgtgtgtagagccacttgtttttggaagatacaaaatctatagctttctccttcaagta |
339 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27611133 |
tttttgtttcttgtgctagctttctgttcatttctcatgattgtgtgcagagccacttgtttttggaagatacaaaatctatagctttctccttcaagta |
27611034 |
T |
|
| Q |
340 |
aatcgccgcctctgcccttctattctctcattttctttctttttattttgtcacctatatcattcaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27611033 |
aatcgccgcctctgcccttctattctctcattttctttctttttattttgtcatctatatcattcaat |
27610966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 22406550 - 22406753
Alignment:
| Q |
18 |
aattaagagtaagaaataacccctaaaagaaaggaaaattcttgctccaagaattgaatcttcaatttctatccccaaagctcttctctttgttgcatgt |
117 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22406550 |
aattaagaacaagaaataacc--taaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgt |
22406647 |
T |
|
| Q |
118 |
agtatctctgtaatatgtcaagtctcc----tgttgatttgaaatgctctatatatagccctctagaactcaattttacaccg-acctcgaaattacttc |
212 |
Q |
| |
|
||| ||| |||| | |||| |||||| |||||||||| |||| || ||||||| ||||| ||||||||||| ||||| || | |||||||||| |
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|
| T |
22406648 |
agtgtctgtgtagtgtgtc--gtctcctccttgttgatttgcaatg--ctttatatagacctcttgaactcaattt--caccgccccccaaaattacttc |
22406741 |
T |
|
| Q |
213 |
atagtaaggttt |
224 |
Q |
| |
|
| |||||||||| |
|
|
| T |
22406742 |
acagtaaggttt |
22406753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 10889874 - 10889765
Alignment:
| Q |
18 |
aattaagagtaagaaataacccctaaaagaaaggaaaattcttgctccaagaattgaatcttcaatttctatccccaaagctcttctctttgttgcatgt |
117 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10889874 |
aattaagaacaagaaataacc--taaaagaaaggaaaattcttgctccaagactcgaatcttcaatttctatctccaaagctcttctctttgttgcatgt |
10889777 |
T |
|
| Q |
118 |
agtatctctgta |
129 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
10889776 |
agtgtctgtgta |
10889765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 23165131 - 23165216
Alignment:
| Q |
18 |
aattaagagtaagaaataacccctaaaagaaaggaaaattcttgctccaagaattgaatcttcaatttctatccccaaagctcttctct |
106 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
23165131 |
aattaagaacaagaaataacc--taaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctat-cccaaaactcttctct |
23165216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 23576388 - 23576473
Alignment:
| Q |
18 |
aattaagagtaagaaataacccctaaaagaaaggaaaattcttgctccaagaattgaatcttcaatttctatccccaaagctcttctct |
106 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
23576388 |
aattaagaacaagaaataacc--taaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctat-cccaaaactcttctct |
23576473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 145 - 407
Target Start/End: Original strand, 11063736 - 11064003
Alignment:
| Q |
145 |
tgttgatttgaaatgctctatatatagccctctagaactcaattttacaccgacctcgaaattacttcatagtaaggtttccttcaccgtcttccttttt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11063736 |
tgttgatttgaaatgctctatatatagccctctagaactcaattttacaccgaccccaaaattacttcatagtaaggtttccttcaccgtcttcctcttt |
11063835 |
T |
|
| Q |
245 |
gtttcttgtgctagctttttgttcatttctcatgattgtgtgtagagccac------ttgtttttggaagatacaaaatctatagctttctccttcaagt |
338 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11063836 |
gtttcttgcgctagc-ttctgttcatttctcatgattgtgtgcagagccacttgtttttgtttttggaagatacaaaatctatagctttctccttcaagt |
11063934 |
T |
|
| Q |
339 |
aaatcgccgcctctgcccttctattctctcattttctttctttttattttgtcacctatatcattcaat |
407 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11063935 |
aaatcaccgcctctgcccttctattctctcattttctttcttttcattttgtcacctatatcattcaat |
11064003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 17341941 - 17341846
Alignment:
| Q |
228 |
tcaccgtcttccttttt-gtttcttgtgctagctttttgttcatttctcatgattgtgtgtagagccacttgtttttggaagatacaaaatctatag |
323 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| | |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17341941 |
tcaccgtcttccttttttgtttcttgctctagcttct-gttcatttttcatgattgtgtgcagagccacttgtttctggaagatacaaaatctatag |
17341846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 4431 - 4553
Alignment:
| Q |
18 |
aattaagagtaagaaataacccctaaaagaaaggaaaattcttgctccaagaattgaatcttcaatttctatccccaaagctcttctctttgttgcatgt |
117 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4431 |
aattaagaacaagaaataacc--taaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatgt |
4528 |
T |
|
| Q |
118 |
agtatctctgtaatatgtcaagtct |
142 |
Q |
| |
|
||| ||| |||| | ||| |||||| |
|
|
| T |
4529 |
agtgtctgtgtagtgtgtgaagtct |
4553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 8305 - 8416
Alignment:
| Q |
18 |
aattaagagtaagaaataacccctaaaagaaaggaaaattcttgctccaagaattgaatcttcaatttctatccccaaagctcttctctttgttgcatgt |
117 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8305 |
aattaagaacaagaaataacc--taaaagaaaggaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctgttctctttgttgcatgt |
8402 |
T |
|
| Q |
118 |
agtatctctgtaat |
131 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
8403 |
agtgtctgtgtaat |
8416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 10382 - 10265
Alignment:
| Q |
10 |
acatcatcaattaagagtaagaaataacccctaaaagaaaggaaaattcttgctccaagaattgaatcttcaatttctatccccaaagctcttctctttg |
109 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10382 |
acatcatatattaagaaaaagaaataacc--taaaagaaaggaaaattcttactccaagacttgaatcttcaatttctatccccaaagctcttctctttg |
10285 |
T |
|
| Q |
110 |
ttgcatgtagtatctctgta |
129 |
Q |
| |
|
||||||||||| ||| |||| |
|
|
| T |
10284 |
ttgcatgtagtgtctgtgta |
10265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 10015 - 9960
Alignment:
| Q |
344 |
gccgcctctgcccttctattctctcattttctttctttttattttgtcacctatatc |
400 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
10015 |
gccgcctctgcccttgtattctctcattt-ctttctttttattttatcacctatatc |
9960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 11543369 - 11543261
Alignment:
| Q |
18 |
aattaagagtaagaaataacccctaaaagaaaggaaaattcttgctccaagaattgaatcttcaatttctatccccaaagctcttctctttgttgcatgt |
117 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11543369 |
aattaagaataagaaataacc--taaaagaaaggaaaattcttgctccaagacttgaat-ttcaatttctatccccaaagctcttctctttgttgcatgt |
11543273 |
T |
|
| Q |
118 |
agtatctctgta |
129 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
11543272 |
agtgtctgtgta |
11543261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 21432500 - 21432625
Alignment:
| Q |
18 |
aattaagagtaagaaataacccctaaaagaaaggaaaa-ttcttgctccaagaattgaatcttcaatttctatccccaaagctcttctctttgttgcatg |
116 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21432500 |
aattaagaacaagaaataacc--taaaagaaagaaaaaattcttgctccaagacttgaatcttcaatttctatccccaaagctcttctctttgttgcatg |
21432597 |
T |
|
| Q |
117 |
tagtatctctgtaatatgtcaagtctcc |
144 |
Q |
| |
|
|||| ||| |||||| | | |||||||| |
|
|
| T |
21432598 |
tagtgtctgtgtaatgtctgaagtctcc |
21432625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 119382 - 119273
Alignment:
| Q |
18 |
aattaagagtaagaaataacccctaaaagaaaggaaaattcttgctccaagaattgaatcttcaatttctatccccaaagctcttctctttgttgcatgt |
117 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
119382 |
aattaagaacaagaaataacc--taaaagaaaggaaaattcttgctccaagactcgaatcttcaatttctatctccaaagctcttctctttgttgcatgt |
119285 |
T |
|
| Q |
118 |
agtatctctgta |
129 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
119284 |
agtgtctgtgta |
119273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 21459 - 21364
Alignment:
| Q |
228 |
tcaccgtcttccttttt-gtttcttgtgctagctttttgttcatttctcatgattgtgtgtagagccacttgtttttggaagatacaaaatctatag |
323 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| | |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21459 |
tcaccgtcttccttttttgtttcttgcactagcttct-gttcatttttcatgattgtgtgcagagccacttgtttctggaagatacaaaatctatag |
21364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 26160 - 26065
Alignment:
| Q |
228 |
tcaccgtcttccttttt-gtttcttgtgctagctttttgttcatttctcatgattgtgtgtagagccacttgtttttggaagatacaaaatctatag |
323 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| | |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26160 |
tcaccgtcttccttttttgtttcttgctctagcttct-gttcatttttcatgattgtgtgcagagccacttgtttctggaagatacaaaatctatag |
26065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 14277272 - 14277399
Alignment:
| Q |
18 |
aattaagagtaagaaataacccctaaaagaaagga-aaattcttgctccaagaattgaatcttcaatttctatccccaa-----agctcttctctttgtt |
111 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
14277272 |
aattaagaacaagaaataacc--taaaagaaaggggaaatttttgctccaagacttgaatcttcaattcctatccccaaaccaaagctcttctctttgtt |
14277369 |
T |
|
| Q |
112 |
gcatgtagtatctctgtaatatgtcaagtc |
141 |
Q |
| |
|
||||||||| |||||||||| ||| ||||| |
|
|
| T |
14277370 |
gcatgtagtgtctctgtaatgtgtgaagtc |
14277399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 14277638 - 14277693
Alignment:
| Q |
344 |
gccgcctctgcccttctattctctcattttctttctttttattttgtcacctatatc |
400 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
14277638 |
gccgcctctgcccttgtattctcacattt-ctttctttttattttctcacctatatc |
14277693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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