View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9648_low_8 (Length: 319)

Name: NF9648_low_8
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9648_low_8
NF9648_low_8
[»] chr1 (13 HSPs)
chr1 (71-308)||(14368835-14369072)
chr1 (73-199)||(19481218-19481345)
chr1 (71-175)||(21638342-21638447)
chr1 (71-197)||(2104336-2104463)
chr1 (71-197)||(482583-482710)
chr1 (71-199)||(19481468-19481597)
chr1 (71-175)||(38739822-38739928)
chr1 (72-175)||(15985212-15985316)
chr1 (71-164)||(40664144-40664238)
chr1 (111-197)||(35024571-35024657)
chr1 (73-129)||(463228-463285)
chr1 (76-129)||(11149504-11149558)
chr1 (76-129)||(40367544-40367598)
[»] chr4 (12 HSPs)
chr4 (71-197)||(51564814-51564941)
chr4 (71-197)||(27048484-27048611)
chr4 (72-175)||(34206071-34206170)
chr4 (110-175)||(20545785-20545850)
chr4 (71-199)||(7193562-7193698)
chr4 (73-129)||(21497761-21497818)
chr4 (73-129)||(21498156-21498213)
chr4 (71-175)||(27048218-27048323)
chr4 (73-129)||(38908086-38908143)
chr4 (73-129)||(41176675-41176732)
chr4 (134-197)||(28085634-28085697)
chr4 (71-108)||(29669439-29669476)
[»] chr3 (13 HSPs)
chr3 (76-199)||(38300365-38300490)
chr3 (71-168)||(31563775-31563873)
chr3 (71-168)||(31564079-31564177)
chr3 (87-199)||(33909420-33909533)
chr3 (76-199)||(38300834-38300959)
chr3 (73-129)||(34356987-34357044)
chr3 (71-124)||(21750449-21750503)
chr3 (99-180)||(33909938-33910019)
chr3 (105-199)||(38300560-38300655)
chr3 (132-199)||(53981801-53981868)
chr3 (73-118)||(48407827-48407873)
chr3 (71-108)||(47833738-47833775)
chr3 (138-174)||(31563878-31563914)
[»] chr7 (10 HSPs)
chr7 (71-172)||(12525059-12525161)
chr7 (71-153)||(48116372-48116455)
chr7 (88-173)||(12578563-12578649)
chr7 (71-197)||(14690977-14691100)
chr7 (74-198)||(12524437-12524562)
chr7 (88-199)||(12518273-12518385)
chr7 (71-172)||(12524761-12524863)
chr7 (71-108)||(1663681-1663718)
chr7 (72-108)||(31149048-31149084)
chr7 (72-108)||(31167340-31167376)
[»] chr5 (1 HSPs)
chr5 (71-174)||(12965322-12965426)
[»] chr2 (8 HSPs)
chr2 (103-175)||(10429697-10429769)
chr2 (71-174)||(2333434-2333538)
chr2 (71-129)||(15061341-15061400)
chr2 (71-199)||(901815-901951)
chr2 (71-129)||(29923269-29923328)
chr2 (73-129)||(25286338-25286395)
chr2 (73-197)||(30160228-30160353)
chr2 (76-175)||(30156131-30156231)
[»] chr6 (5 HSPs)
chr6 (72-169)||(28072549-28072647)
chr6 (88-175)||(28072010-28072097)
chr6 (71-129)||(1468931-1468989)
chr6 (106-197)||(5556972-5557062)
chr6 (71-108)||(8144008-8144045)
[»] chr8 (8 HSPs)
chr8 (73-129)||(43984394-43984451)
chr8 (71-164)||(9091228-9091322)
chr8 (147-199)||(7622092-7622144)
chr8 (135-197)||(7621803-7621865)
chr8 (71-118)||(7622274-7622323)
chr8 (73-118)||(43984122-43984168)
chr8 (147-198)||(36994095-36994146)
chr8 (147-199)||(7622203-7622255)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 71 - 308
Target Start/End: Original strand, 14368835 - 14369072
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccctcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacacccc 170  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  14368835 ctatctaaccgatgcaagactaaatccacccctcaaagacaagccaacacaaggcaactgagagcagatcgcaattaaggtgggattaccaacacacccc 14368934  T
Q  171 ctcactcttggggaggaatttccaacacatctcgatccaacagttgagattcagttggaccgcctggctctagaggattcaggttnnnnnnntgttctta 270  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||| ||    
T  14368935 ctcactcttggggagggatttccaacacatctcgatccaacagttgagattcagttggaccgcctggctctagaggattcaggttaaattttttttccta 14369034  T
Q  271 aatataacaattttgacatgttattttctgttgtctct 308  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  14369035 aatataacaattttgacacgttattttatgttgtctct 14369072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 19481345 - 19481218
Alignment:
Q  73 atctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccc 171  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||  | ||| |||||| |||||||||||||||||||||||||||    
T  19481345 atctaactgatgtgggactaaatccaccccctcaaagacaagccaacacaaggcaactaggggcagatcgcaattaaggtgggattaccaacacaccccc 19481246  T
Q  172 tcactcttggggaggaatttccaacaca 199  Q
    |||| || |||| || ||||||||||||    
T  19481245 tcacactcggggcgggatttccaacaca 19481218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 21638342 - 21638447
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccaccc-ctcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    ||||||||||||||  ||||||||||||||| |||||||||||||||||| |||||||||  | ||| ||| || |||||||||||||||||||||||||    
T  21638342 ctatctaaccgatgcgggactaaatccaccctctcaaagacaagccaacataaggcaactaggggcagatcacaattaaggtgggattaccaacacaccc 21638441  T
Q  170 cctcac 175  Q
    ||||||    
T  21638442 cctcac 21638447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 2104336 - 2104463
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||  | ||| |||||| ||||| ||| ||||||||| |||||    
T  2104336 ctatctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaactcggggcagatcgcaattaagatggaattaccaacccaccc 2104435  T
Q  170 cctcactcttggggaggaatttccaaca 197  Q
    ||||||  | |||| || ||||||||||    
T  2104436 cctcacgttcggggcgggatttccaaca 2104463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 482710 - 482583
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc--tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacacc 168  Q
    |||||| |||||||| ||||||||||||||||  ||||||||||||||||| |||||||||  | ||| |||||| | |||||||||||||| |||||||    
T  482710 ctatctgaccgatgtgggactaaatccacccccctcaaagacaagccaacataaggcaactaggggcagatcgcaatcaaggtgggattacc-acacacc 482612  T
Q  169 ccctcactcttggggaggaatttccaaca 197  Q
    ||||||| || |||| || ||||||||||    
T  482611 ccctcacgctcggggcgggatttccaaca 482583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 19481468 - 19481597
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccaccc-ctcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |||||  | ||| |||||| |||||||| |||||||||||||| |    
T  19481468 ctatctaaccgttgtgggactaaatccaccctctcaaagacaagccaacacaagacaactaggggcagatcgcaattaaggtgagattaccaacacacac 19481567  T
Q  170 cctcactcttggggaggaatttccaacaca 199  Q
    |||||| || ||||  |  |||||||||||    
T  19481568 cctcacgctcggggcagggtttccaacaca 19481597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 38739928 - 38739822
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccac-ccctcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaagg-tgggattaccaacacacc 168  Q
    ||||||||| |||||  |||||||||||| |||||||||||||||||||| |||||||||  |  |||||| || |||||| ||||||||||||||||||    
T  38739928 ctatctaactgatgtgagactaaatccactccctcaaagacaagccaacataaggcaactagggccaaatcacaattaagggtgggattaccaacacacc 38739829  T
Q  169 ccctcac 175  Q
    |||||||    
T  38739828 ccctcac 38739822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 15985316 - 15985212
Alignment:
Q  72 tatctaaccgatgtaggactaaatccacccct-caaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacacccc 170  Q
    |||||||| ||||| ||||||||||||||||| | |||||||||||||| |||||||||  | | | ||| || |||||||||||||||||||||||| |    
T  15985316 tatctaacagatgtgggactaaatccaccccttcgaagacaagccaacataaggcaactaggggaagatcacaattaaggtgggattaccaacacacctc 15985217  T
Q  171 ctcac 175  Q
    |||||    
T  15985216 ctcac 15985212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 40664238 - 40664144
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaaca 164  Q
    |||||||||||||||  ||||||||||||||| |||||| ||||||||||||||||||||  | ||| || ||| ||||||||||||||| ||||    
T  40664238 ctatctaaccgatgtgagactaaatccaccccctcaaagtcaagccaacacaaggcaactaggggcagattgcacttaaggtgggattactaaca 40664144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 35024571 - 35024657
Alignment:
Q  111 aagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccctcactcttggggaggaatttccaaca 197  Q
    |||||||||||||| || |  | ||| |||||| | ||||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  35024571 aagccaacacaaggtaattaggggcagatcgcaataaaggtgggattaccaacacaccccctcacgcttggggtgggatttccaaca 35024657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 463228 - 463285
Alignment:
Q  73 atctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaact 129  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  463228 atctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaact 463285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 11149504 - 11149558
Alignment:
Q  76 taaccgatgtaggactaaatcca-cccctcaaagacaagccaacacaaggcaact 129  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||    
T  11149504 taaccgatgtgggactaaatccaccccctcaaagacaagccaacataagacaact 11149558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 40367598 - 40367544
Alignment:
Q  76 taaccgatgtaggactaaatccacccct-caaagacaagccaacacaaggcaact 129  Q
    |||||||||| ||||||||||||||||  |||||||||||||||| |||||||||    
T  40367598 taaccgatgtgggactaaatccacccccgcaaagacaagccaacataaggcaact 40367544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 51564941 - 51564814
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    |||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||  | | | |||||| |||||||||||||| ||||||||||    
T  51564941 ctatctaaccaatgtgggactaaatccaccccctcaaagacaggccaacacaaggcaactaggggaagatcgcaattaaggtgggattagcaacacaccc 51564842  T
Q  170 cctcactcttggggaggaatttccaaca 197  Q
    ||||| ||||| || || ||||||||||    
T  51564841 cctcattcttgaggggggatttccaaca 51564814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 27048484 - 27048611
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||   ||| ||| || |||||| ||||||||||||||||||    
T  27048484 ctatctaaccgatgtgggactaaatccaccccctcaaagacaagccgacagaaggcaactggaggcagatcacaattaaggcgggattaccaacacaccc 27048583  T
Q  170 cctcactcttggggaggaatttccaaca 197  Q
    |||||| || |||| || ||||| ||||    
T  27048584 cctcacgctcggggcgggatttctaaca 27048611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 34206071 - 34206170
Alignment:
Q  72 tatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacacccc 170  Q
    |||||||||||||| |||||||||||||||| ||||||     ||||||||||||||||  | ||| |||||| | ||||||||||||||||||||||||    
T  34206071 tatctaaccgatgtgggactaaatccaccccctcaaag-----ccaacacaaggcaactaggggcagatcgcaataaaggtgggattaccaacacacccc 34206165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 20545785 - 20545850
Alignment:
Q  110 caagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccctcac 175  Q
    ||||||||||| |||||||  || |||||||||||||||||| |||||||||||||||||||||||    
T  20545785 caagccaacacgaggcaaccaagggcaaatcgcagttaaggtaggattaccaacacaccccctcac 20545850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 7193698 - 7193562
Alignment:
Q  71 ctatctaaccgatgtaggactaaatcca-cccctcaaagacaagccaacacaaggcaactgagagcaaatcgca-------gttaaggtgggattaccaa 162  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| |||  | ||| ||||||        ||||||||| ||||||||    
T  7193698 ctatctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggccactaggggcagatcgcatcgcaattttaaggtggaattaccaa 7193599  T
Q  163 cacaccccctcactcttggggaggaatttccaacaca 199  Q
    | |||||||||||  | |||| || ||||||||||||    
T  7193598 cccaccccctcacattcggggcgggatttccaacaca 7193562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 21497761 - 21497818
Alignment:
Q  73 atctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaact 129  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  21497761 atctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaact 21497818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 21498213 - 21498156
Alignment:
Q  73 atctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaact 129  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  21498213 atctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaact 21498156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 27048218 - 27048323
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccctc-aaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    |||| ||||| |||| ||||||||||||||||   ||||||||||||||||||||||||   | ||||||  || ||||||||||||||||||||||  |    
T  27048218 ctatataaccaatgtgggactaaatccacccccataaagacaagccaacacaaggcaaccaggggcaaattacaattaaggtgggattaccaacacaaac 27048317  T
Q  170 cctcac 175  Q
    ||||||    
T  27048318 cctcac 27048323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 38908143 - 38908086
Alignment:
Q  73 atctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaact 129  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  38908143 atctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaact 38908086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 41176732 - 41176675
Alignment:
Q  73 atctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaact 129  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  41176732 atctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaact 41176675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 28085697 - 28085634
Alignment:
Q  134 gcaaatcgcagttaaggtgggattaccaacacaccccctcactcttggggaggaatttccaaca 197  Q
    |||||||||| |||||||| ||||||||||||| |||||||| || || | || ||||||||||    
T  28085697 gcaaatcgcaattaaggtgagattaccaacacaacccctcacgctcggagcgggatttccaaca 28085634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 29669439 - 29669476
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccctcaaag 108  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  29669439 ctatctatccgatgtgggactaaatccacccctcaaag 29669476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 38300365 - 38300490
Alignment:
Q  76 taaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattacc-aacacaccccctc 173  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| || ||| |||||| |||||||||  ||||| |||||||||||||    
T  38300365 taaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaactaagggcagatcgcaattaaggtggtcttaccaaacacaccccctc 38300464  T
Q  174 actcttggggaggaatttccaacaca 199  Q
    ||| | |||| |  ||||||||||||    
T  38300465 actttcggggcgagatttccaacaca 38300490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 31563775 - 31563873
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacacc 168  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||||||| |||||||||  | ||| |||||| ||||||||| ||||||||||||||    
T  31563775 ctatctaactgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaactaggggcagatcgcaattaaggtggaattaccaacacacc 31563873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 31564079 - 31564177
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacacc 168  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||||||| |||||||||  | ||| |||||| ||||||||| ||||||||||||||    
T  31564079 ctatctaactgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaactaggggcagatcgcaattaaggtggaattaccaacacacc 31564177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 33909420 - 33909533
Alignment:
Q  87 ggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagag-caaatcgcagttaaggtgggattaccaacacaccccctcactcttgggga 184  Q
    |||||||||||||||| |||||| ||||||| |||||||||||| |||| || |||||| | |||||||||||||||||||| |||||||| |||||||     
T  33909420 ggactaaatccaccccctcaaagtcaagccagcacaaggcaact-agaggcagatcgcaataaaggtgggattaccaacacatcccctcacacttggggg 33909518  T
Q  185 ggaatttccaacaca 199  Q
     | ||||||||||||    
T  33909519 aggatttccaacaca 33909533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 38300834 - 38300959
Alignment:
Q  76 taaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattacc-aacacaccccctc 173  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||  | ||| |||||| |||||||||  ||||| |||||| ||||||    
T  38300834 taaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaactaggggcagatcgcaattaaggtggtcttaccaaacacatcccctc 38300933  T
Q  174 actcttggggaggaatttccaacaca 199  Q
    ||| | |||| |  ||||||||||||    
T  38300934 actttcggggcgagatttccaacaca 38300959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 34356987 - 34357044
Alignment:
Q  73 atctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaact 129  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  34356987 atctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaact 34357044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 21750503 - 21750449
Alignment:
Q  71 ctatctaaccgatgtaggactaaatcca-cccctcaaagacaagccaacacaagg 124  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  21750503 ctatctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataagg 21750449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 33909938 - 33910019
Alignment:
Q  99 cccctcaaagacaagccaacacaaggcaact-gagagcaaatcgcagttaaggtgggattaccaacacaccccctcactcttg 180  Q
    |||||||||| |||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||| || |||||||| ||||    
T  33909938 cccctcaaagtcaagccaacacaaggcaactagag-gcagatcgcaataaaggtgggattaccaacgcatcccctcacacttg 33910019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 38300560 - 38300655
Alignment:
Q  105 aaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattacc-aacacaccccctcactcttggggaggaatttccaacaca 199  Q
    ||||||||||||||| |||||||||  | ||| |||||| |||||||||  ||||| |||||||||||||||| | |||| |  ||||||||||||    
T  38300560 aaagacaagccaacataaggcaactaggggcagatcgcaattaaggtggtcttaccaaacacaccccctcactttcggggcgagatttccaacaca 38300655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 53981868 - 53981801
Alignment:
Q  132 gagcaaatcgcagttaaggtgggattaccaacacaccccctcactcttggggaggaatttccaacaca 199  Q
    ||||| |||||| | |||||||||||||| |||||| ||||||| || ||||||| ||||||| ||||    
T  53981868 gagcatatcgcaataaaggtgggattaccgacacacaccctcacgctcggggagggatttccatcaca 53981801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 48407873 - 48407827
Alignment:
Q  73 atctaaccgatgtaggactaaatcca-cccctcaaagacaagccaac 118  Q
    ||||||||||||| |||||||||||| ||||||||||||||| ||||    
T  48407873 atctaaccgatgtgggactaaatccaccccctcaaagacaaggcaac 48407827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 47833738 - 47833775
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccctcaaag 108  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  47833738 ctatctatccgatgtgggactaaatccacccctcaaag 47833775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 31563878 - 31563914
Alignment:
Q  138 atcgcagttaaggtgggattaccaacacaccccctca 174  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  31563878 atcgcaattaaggtgggatttccaacacaccccctca 31563914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 12525161 - 12525059
Alignment:
Q  71 ctatctaaccgatgtaggactaaatcca-cccctcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    ||||||||||||||| ||||||||| || ||||| |||||||||||||||||||| ||||  | |||||||||| ||||||||||||||| | |||||||    
T  12525161 ctatctaaccgatgtgggactaaattcatccccttaaagacaagccaacacaaggaaactaggggcaaatcgcaattaaggtgggattactagcacaccc 12525062  T
Q  170 cct 172  Q
    |||    
T  12525061 cct 12525059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 48116372 - 48116455
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgg 153  Q
    |||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||  | ||| |||||| |||||||||    
T  48116372 ctatctaaccaatgtgggactaaatccaccccctcaaagacaagccaacataaggcaactaggggcagatcgcaattaaggtgg 48116455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 12578563 - 12578649
Alignment:
Q  88 gactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccctc 173  Q
    ||||||||||||||| ||||||||||||||||| ||| ||| |  ||||| |||||| ||||||||| ||||||||| |||||||||    
T  12578563 gactaaatccaccccctcaaagacaagccaacataagacaattaggagcagatcgcaattaaggtggaattaccaacccaccccctc 12578649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 197
Target Start/End: Complemental strand, 14691100 - 14690977
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccct-caaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    ||||||||||||||| |||| ||||  |||||| |||||||    | |||||||||||||  | ||| |||||| ||||||| |||||||||||||||||    
T  14691100 ctatctaaccgatgtgggacaaaatttaccccttcaaagac----cgacacaaggcaactaggggcagatcgcaattaaggtaggattaccaacacaccc 14691005  T
Q  170 cctcactcttggggaggaatttccaaca 197  Q
    |||||  || ||||||| ||||||||||    
T  14691004 cctcatgctcggggagggatttccaaca 14690977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 12524562 - 12524437
Alignment:
Q  74 tctaaccgatgtaggactaaatccaccc-ctcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccct 172  Q
    ||||||||| || || |||||||||||| || |||||| |||||| |||||| ||||  | ||| ||| || ||||||||||||||||||||||| || |    
T  12524562 tctaaccgacgtggggctaaatccacccgcttaaagaccagccaatacaaggaaactaggggcatatcacaattaaggtgggattaccaacacacgcctt 12524463  T
Q  173 cactcttggggaggaatttccaacac 198  Q
    ||| || ||||  | |||||||||||    
T  12524462 cacactcggggcaggatttccaacac 12524437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 12518273 - 12518385
Alignment:
Q  88 gactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccctcactcttggggagg 186  Q
    ||||||||||||||| ||||||| ||||||||| ||| ||| |  | ||| |||||| ||||||||| ||||||||| ||||||||| |  | |||| ||    
T  12518273 gactaaatccaccccctcaaagataagccaacataagacaattaggggcagatcgcaattaaggtggaattaccaacccaccccctctcgttcggggtgg 12518372  T
Q  187 aatttccaacaca 199  Q
     ||||||||||||    
T  12518373 gatttccaacaca 12518385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 12524863 - 12524761
Alignment:
Q  71 ctatctaaccgatgtaggactaaatcca-cccctcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    ||||||||||||||| |||||||||| | ||||| ||||| ||| |||||||||| ||||  | | | ||| || ||||||||||||||| | |||||||    
T  12524863 ctatctaaccgatgtgggactaaatctacccccttaaagataagacaacacaaggaaactacgggaagatctcacttaaggtgggattacaatcacaccc 12524764  T
Q  170 cct 172  Q
    |||    
T  12524763 cct 12524761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 1663681 - 1663718
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccctcaaag 108  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  1663681 ctatctatccgatgtgggactaaatccacccctcaaag 1663718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 31149084 - 31149048
Alignment:
Q  72 tatctaaccgatgtaggactaaatccacccctcaaag 108  Q
    |||||| | ||||||||||||||||||||||||||||    
T  31149084 tatctatctgatgtaggactaaatccacccctcaaag 31149048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 31167376 - 31167340
Alignment:
Q  72 tatctaaccgatgtaggactaaatccacccctcaaag 108  Q
    |||||| | ||||||||||||||||||||||||||||    
T  31167376 tatctatctgatgtaggactaaatccacccctcaaag 31167340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 12965322 - 12965426
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||||  | ||| |||||| |  |||||| ||||||||||| |||    
T  12965322 ctatctaaccgatgtggcactaaatccaccccctcaaagacaagccaacataaggcaactaggtgcagatcgcaatacaggtggaattaccaacaccccc 12965421  T
Q  170 cctca 174  Q
    |||||    
T  12965422 cctca 12965426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 10429769 - 10429697
Alignment:
Q  103 tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccctcac 175  Q
    |||||||||||||||||||||||||||  | ||| |||||| ||||||||||||||||||||||| |||||||    
T  10429769 tcaaagacaagccaacacaaggcaactaggggcagatcgcaattaaggtgggattaccaacacacaccctcac 10429697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 2333434 - 2333538
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    |||| ||||| |||| ||| ||| |||||||| ||||| ||||||||||| |||||||||  | |||||| ||| |||||||| ||||||||||||||||    
T  2333434 ctatttaaccaatgtgggattaattccaccccctcaaatacaagccaacataaggcaactaggggcaaattgcaattaaggtgtgattaccaacacaccc 2333533  T
Q  170 cctca 174  Q
    |||||    
T  2333534 cctca 2333538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 15061341 - 15061400
Alignment:
Q  71 ctatctaaccgatgtaggactaaatcca-cccctcaaagacaagccaacacaaggcaact 129  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  15061341 ctatctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaact 15061400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 901951 - 901815
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccaccc-ctcaaagacaagccaacacaaggcaactgagagcaaatcgca-------gttaaggtgggattaccaa 162  Q
    ||||||||||||||| | ||||||||||||| |||||||||||||||||| |||||||||  | ||| ||||||        ||||||||| ||||||||    
T  901951 ctatctaaccgatgtggcactaaatccaccctctcaaagacaagccaacataaggcaactaggggcagatcgcatcgcaattttaaggtggaattaccaa 901852  T
Q  163 cacaccccctcactcttggggaggaatttccaacaca 199  Q
    | |||||||||||  | |||| || ||||||||||||    
T  901851 cccaccccctcacattcggggcgggatttccaacaca 901815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 29923328 - 29923269
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaact 129  Q
    ||||||||| |||||  ||||||||||||||| |||||||||||||||||||||||||||    
T  29923328 ctatctaacagatgtgagactaaatccaccccctcaaagacaagccaacacaaggcaact 29923269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 25286338 - 25286395
Alignment:
Q  73 atctaaccgatgtaggactaaatcca-cccctcaaagacaagccaacacaaggcaact 129  Q
    ||||||||||||| |||||||||||| |||| |||||||||||||||| |||||||||    
T  25286338 atctaaccgatgtgggactaaatccacccccgcaaagacaagccaacataaggcaact 25286395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 30160353 - 30160228
Alignment:
Q  73 atctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccc 171  Q
    ||||||||| ||| |||||||||||||||| ||||||  ||||||||| ||||| |||  | ||| |||||| ||||| ||| ||||| ||| |||||||    
T  30160353 atctaaccgctgtgggactaaatccaccccctcaaaggtaagccaacataaggcgacttggggcagatcgcaattaagatggaattactaacccaccccc 30160254  T
Q  172 tcactcttggggaggaatttccaaca 197  Q
    ||||  | |||| || ||||||||||    
T  30160253 tcacattcggggcgggatttccaaca 30160228  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 30156231 - 30156131
Alignment:
Q  76 taaccgatgtaggactaaatcca-cccctcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccctca 174  Q
    |||||||||| |||||||||||| |||||||||| |||||||||| |||||||||  |  || ||| || ||||| ||| ||||| ||| ||||||||||    
T  30156231 taaccgatgtgggactaaatccaccccctcaaaggcaagccaacataaggcaactcgggtcagatcacaattaagatggaattactaacccaccccctca 30156132  T
Q  175 c 175  Q
    |    
T  30156131 c 30156131  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 28072549 - 28072647
Alignment:
Q  72 tatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaact-gagagcaaatcgcagttaaggtgggattaccaacacaccc 169  Q
    |||||||||||||| |||||||||||||||| ||||||||||  ||||||||||||||| ||| ||| || ||| ||||||||||||||||||| |||||    
T  28072549 tatctaaccgatgtgggactaaatccaccccttcaaagacaaatcaacacaaggcaactagag-gcagatagcaattaaggtgggattaccaacccaccc 28072647  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 28072010 - 28072097
Alignment:
Q  88 gactaaatccacccctcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccctcac 175  Q
    ||||||||||||||||||| |||||||||||| |||||||||  | ||| |||||| ||||||||  |||||  ||||||||||||||    
T  28072010 gactaaatccacccctcaatgacaagccaacataaggcaactaggggcagatcgcaattaaggtgatattacttacacaccccctcac 28072097  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 1468989 - 1468931
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaact 129  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||| | |||||||||    
T  1468989 ctatctaaccgatgtgggactaa-tccaccccctcaaagacaagccaatataaggcaact 1468931  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 5557062 - 5556972
Alignment:
Q  106 aagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaacacaccccctcactcttggggaggaatttccaaca 197  Q
    |||||||||||||||||| ||||  || | |||||||| | |||||  || |||||||||||||| |||| ||||| | |||||||||||||    
T  5557062 aagacaagccaacacaagacaaca-agggaaaatcgcaataaaggttagactaccaacacaccccatcacgcttggagcggaatttccaaca 5556972  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 8144045 - 8144008
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccctcaaag 108  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  8144045 ctatctatccgatgtgggactaaatccacccctcaaag 8144008  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 43984394 - 43984451
Alignment:
Q  73 atctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaact 129  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  43984394 atctaaccgatgtgggactaaatccaccccctcaaagacaagccaacataaggcaact 43984451  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 9091228 - 9091322
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacccc-tcaaagacaagccaacacaaggcaactgagagcaaatcgcagttaaggtgggattaccaaca 164  Q
    |||||||||||||||  ||||||||||||||| ||||||||||| ||||| ||  |||||  | ||| |||||| |||||||| |||||||||||    
T  9091228 ctatctaaccgatgtgagactaaatccaccccctcaaagacaagtcaacataaaacaactaggggcagatcgcaattaaggtgtgattaccaaca 9091322  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 7622144 - 7622092
Alignment:
Q  147 aaggtgggattaccaacacaccccctcactcttggggaggaatttccaacaca 199  Q
    |||||||||||||||||||||||||||||  |||||| || ||||||||||||    
T  7622144 aaggtgggattaccaacacaccccctcacgtttggggcgggatttccaacaca 7622092  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 7621865 - 7621803
Alignment:
Q  135 caaatcgcagttaaggtgggattaccaacacaccccctcactcttggggaggaatttccaaca 197  Q
    |||||| || ||||||||||||||||||| ||||||||||| ||||||| ||  |||||||||    
T  7621865 caaatcacaattaaggtgggattaccaacgcaccccctcacgcttggggcgggttttccaaca 7621803  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 7622323 - 7622274
Alignment:
Q  71 ctatctaaccgatgtaggactaaatccacc--cctcaaagacaagccaac 118  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  7622323 ctatctaaccgatgtgggactaaatccacccgcctcaaagacaagccaac 7622274  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 43984122 - 43984168
Alignment:
Q  73 atctaaccgatgtaggactaaatcca-cccctcaaagacaagccaac 118  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  43984122 atctaaccgatgtgggactaaatccaccccctcaaagacaagccaac 43984168  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 36994095 - 36994146
Alignment:
Q  147 aaggtgggattaccaacacaccccctcactcttggggaggaatttccaacac 198  Q
    |||||||||||||| |||||||||||||| || ||||  |||||||||||||    
T  36994095 aaggtgggattaccgacacaccccctcacgctcggggcagaatttccaacac 36994146  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 7622255 - 7622203
Alignment:
Q  147 aaggtgggattaccaacacaccccctcactcttggggaggaatttccaacaca 199  Q
    ||||||||||||||||| |||||||||||  | |||| || ||||||||||||    
T  7622255 aaggtgggattaccaacgcaccccctcacgttcggggcgggatttccaacaca 7622203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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