View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9648_low_9 (Length: 283)
Name: NF9648_low_9
Description: NF9648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9648_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 39016931 - 39016667
Alignment:
| Q |
1 |
atactccttatagtcctcatcttgaggcagtaaaatcaaatatttacataatacagggatcaattctaatttgaataaattttgcatggagtaaaagcnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39016931 |
atactccttatagtcctcatcttgaggcagtaaaatcaaatatttacataatacagggatcaattctaatttgaataaattttgcatggagtaaaagcaa |
39016832 |
T |
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| Q |
101 |
nnnnntaatatgtttattggaa-tttnnnnnnnnnntgatatattttgagagatcaatattatatttaaacctgatttttatcacataatagtannnnnn |
199 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39016831 |
aaaaa-aatatgtttattggaattttaaaaaaaatatgatatattttgagagatcaatattatatttaaacctgatttttatcacataatagtatttttt |
39016733 |
T |
|
| Q |
200 |
nnagcatgttgatatccttgatgttgtctggtatgtcatttcatcttatcagaataaatggtgcct |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39016732 |
ttagcatgttgatatccttgatgttgtctggtatgtcatttcatcttatcagaataaatggtgcct |
39016667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 38501931 - 38501987
Alignment:
| Q |
31 |
taaaatcaaatatttacataatacagggatcaattctaatttgaataaattttgcat |
87 |
Q |
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| T |
38501931 |
taaaatcaaatatttatatattacagagatcaattctaatataattaaattttgcat |
38501987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 7133301 - 7133387
Alignment:
| Q |
11 |
tagtcctcatcttgaggcagtaaaatcaaatatt-tacataatacagggatcaattctaatttgaataaattttgcatggagtaaaa |
96 |
Q |
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| T |
7133301 |
tagtcctcattttgagggagtaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggactaaaa |
7133387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 51121999 - 51122036
Alignment:
| Q |
214 |
tccttgatgttgtctggtatgtcatttcatcttatcag |
251 |
Q |
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| T |
51121999 |
tccttgatgttgtctggtatgtcatttcatcttatcag |
51122036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 6880180 - 6880094
Alignment:
| Q |
11 |
tagtcctcatcttgaggcagtaaaatcaaatatt-tacataatacagggatcaattctaatttgaataaattttgcatggagtaaaa |
96 |
Q |
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|||||||||| |||||| | |||||||||||||| |||||| || | ||| ||| || ||| |||||||||||| |||||| ||||| |
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| T |
6880180 |
tagtcctcattttgagggattaaaatcaaatattctacatattataaggaccaaatccaatatgaataaattttacatggactaaaa |
6880094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 10913950 - 10914023
Alignment:
| Q |
11 |
tagtcctcatcttgaggcagtaaaatcaaatatt-tacataatacagggatcaattctaatttgaataaatttt |
83 |
Q |
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|||||||||| |||||| | |||||||||||||| |||||| |||| ||| |||||| ||| ||||| |||||| |
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| T |
10913950 |
tagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaattccaatatgaatcaatttt |
10914023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 16525359 - 16525455
Alignment:
| Q |
1 |
atactccttatagtcctcatcttgaggcagtaaaatcaaatatt-tacataatacagggatcaattctaatttgaataaattttgcatggagtaaaa |
96 |
Q |
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|||||| || |||||||||| |||||| | |||||||||||||| |||||| |||| ||| ||| || ||| ||||| |||||| || ||| ||||| |
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| T |
16525359 |
atactcattttagtcctcattttgagggactaaaatcaaatattctacatattacaaggaccaaatccaatatgaatcaattttacaaggattaaaa |
16525455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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