View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_high_10 (Length: 239)
Name: NF9649_high_10
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_high_10 |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2636814 - 2637028
Alignment:
| Q |
1 |
agtgcagatttgatggcagattcactcttggcaaaaactctgggtctaagatgggg---tatccaatcagttctagatttacaatttagtaatgttgtgt |
97 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2636814 |
agtgcagatttgatggcagattgactcttggcaaaaactctgggtctaagatgggggggtatccaatcagttctagatttacaatttagtaatgttgtgt |
2636913 |
T |
|
| Q |
98 |
ttgaattagatgcatcagttgtagttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggta |
197 |
Q |
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|||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2636914 |
ttgaattagatgcatcagctgtagttaagtg---ta--------tcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggta |
2637002 |
T |
|
| Q |
198 |
atttagatggttgttctgttagtttt |
223 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
2637003 |
atttagatggttgttctgttagtttt |
2637028 |
T |
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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 29347129 - 29346924
Alignment:
| Q |
13 |
atggcagattcactcttggcaaaaactctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcat |
112 |
Q |
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||||| ||| |||| |||||| | ||||| ||||||||||||||||||||| | || ||||| |||||| ||||||||||| |||||||||| ||||| | |
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| T |
29347129 |
atggctgatccacttttggcagagactcttggtctaagatggggtatccaaactgtcctagaattacaacttagtaatgttatgtttgaattggatgctt |
29347030 |
T |
|
| Q |
113 |
cagttgtagttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgtt |
212 |
Q |
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| T |
29347029 |
ctgttgtagttaagtgtttcaatgggctgtcaacaatagctagtattagtccctttattagtgactgtcatga-cttgtttggtagtttagttggtagtt |
29346931 |
T |
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| Q |
213 |
ctgttag |
219 |
Q |
| |
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||||||| |
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| T |
29346930 |
ctgttag |
29346924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 4460952 - 4461055
Alignment:
| Q |
115 |
gttgtagttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttct |
214 |
Q |
| |
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|||||| ||||||| ||||| |||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||| |||| ||||| |
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| T |
4460952 |
gttgtacttaagtgttttaatgggctgtcaacaatagctagtattagtccttttattagtgactgtcatga-cttgtttggtagtttagttggtagttct |
4461050 |
T |
|
| Q |
215 |
gttag |
219 |
Q |
| |
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||||| |
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| T |
4461051 |
gttag |
4461055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 37 - 219
Target Start/End: Complemental strand, 16649 - 16468
Alignment:
| Q |
37 |
actctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcatcagttgtagttaagtgctttaacg |
136 |
Q |
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||||| ||||||||||||||||||||| | || ||||| |||||| ||||||||||| |||||||||| ||||| || |||||||||||||| || || | |
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| T |
16649 |
actcttggtctaagatggggtatccaaactgtcctagaattacaacttagtaatgttatgtttgaattggatgcttctgttgtagttaagtgtttcaatg |
16550 |
T |
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| Q |
137 |
ggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttag |
219 |
Q |
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||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||| ||||| |||| |||||||||| |
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| T |
16549 |
ggctgtcaacaatagctagtattagtccctttattagtgactgtcatga-cttgtttggtagtttagttggtagttctgttag |
16468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 35788786 - 35788991
Alignment:
| Q |
13 |
atggcagattcactcttggcaaaaactctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcat |
112 |
Q |
| |
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||||| ||| |||| |||||| | ||||| ||||||||||||||||||||| | || |||| |||||| ||||||||||| |||||||||| ||||| | |
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| T |
35788786 |
atggctgatccactattggcagagactcttggtctaagatggggtatccaaactgtcttagaattacaacttagtaatgttctgtttgaattggatgctt |
35788885 |
T |
|
| Q |
113 |
cagttgtagttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgtt |
212 |
Q |
| |
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| |||||||||||||| ||||| || | ||||||||||||||||| || || |||||||||||||||||||| |||||||||| ||||| |||| ||| |
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| T |
35788886 |
ctgttgtagttaagtgttttaatggactgtcaacaatagctagtattagtccctttattagtgactgtcatga-cttgtttggtagtttagttggtagtt |
35788984 |
T |
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| Q |
213 |
ctgttag |
219 |
Q |
| |
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||||||| |
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| T |
35788985 |
ctgttag |
35788991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 219
Target Start/End: Complemental strand, 14443785 - 14443604
Alignment:
| Q |
37 |
actctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcatcagttgtagttaagtgctttaacg |
136 |
Q |
| |
|
||||| ||||||||||||||||||||| | || ||||| |||||| |||||||| || |||||||||| ||||| || |||||||||||||| || || | |
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| T |
14443785 |
actcttggtctaagatggggtatccaaactgtcctagaattacaacttagtaatattatgtttgaattggatgcttctgttgtagttaagtgtttcaatg |
14443686 |
T |
|
| Q |
137 |
ggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttag |
219 |
Q |
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||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||| ||||| |||| |||||||||| |
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|
| T |
14443685 |
ggctgtcaacaatagctagtattagtccctttattagtgactgtcatga-cttgtttggtagtttagttggtagttctgttag |
14443604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 19501298 - 19501093
Alignment:
| Q |
13 |
atggcagattcactcttggcaaaaactctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcat |
112 |
Q |
| |
|
||||| ||| |||| |||||| | ||||| ||||||||||||||||||||| | || |||| |||||| ||||||||||| | |||||||| ||||| | |
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|
| T |
19501298 |
atggctgatgcactattggcagagactcttggtctaagatggggtatccaaactgtcttagaattacaacttagtaatgttctatttgaattggatgctt |
19501199 |
T |
|
| Q |
113 |
cagttgtagttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgtt |
212 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||||||||||||| | || |||||||||||||||||||| |||||||||| | ||| |||| ||| |
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|
| T |
19501198 |
atgttgtagttaagtgttttaatgggatgtcaacaatagctagtattattccctttattagtgactgtcatga-cttgtttggtagtatagttggtagtt |
19501100 |
T |
|
| Q |
213 |
ctgttag |
219 |
Q |
| |
|
||||||| |
|
|
| T |
19501099 |
ctgttag |
19501093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 6468428 - 6468307
Alignment:
| Q |
37 |
actctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcatcagttgtagttaagtgctttaacg |
136 |
Q |
| |
|
||||| |||||||||||||||||| || | || |||| |||||| ||||||||||| |||||||||| ||||| || |||||||||||||| ||||| | |
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| T |
6468428 |
actcttggtctaagatggggtatctaaactgtcttagaattacaacttagtaatgttttgtttgaattggatgcttctgttgtagttaagtgttttaatg |
6468329 |
T |
|
| Q |
137 |
ggcattcaacaatagctagtat |
158 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
6468328 |
ggctgtcaacaatagctagtat |
6468307 |
T |
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