View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_high_2 (Length: 397)
Name: NF9649_high_2
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 390
Target Start/End: Complemental strand, 41473190 - 41472823
Alignment:
| Q |
22 |
tgtcttaagccaggtaaaattgaggcaatctgggagcataagtattgttttctagacagctactatcattctctatttttgtttttgacattgtaggttc |
121 |
Q |
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| T |
41473190 |
tgtcttaagccaggtaaaattgaggcaatctgggagcataagtattgttttctagacagctactatcattctctatttttgtttttgacattgtaggttc |
41473091 |
T |
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| Q |
122 |
tattatattggaaacgtttatttcgaccctagatttttgttatgatacttttatccctcaagtgtttcaaagaattgtcatgtgtattaaatgctactag |
221 |
Q |
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| T |
41473090 |
ttttatattggaaacgtttatttcgactctagatttttgttatgatacttttatccctcaagagtttgaaagaattgtcatgtgtattaaatgctactag |
41472991 |
T |
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| Q |
222 |
tatacataaagttataaggacaacaatgaacattggcatttgctgcaaaacaacttattannnnnnncacctcaattagtatttctaattgtctatctaa |
321 |
Q |
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| T |
41472990 |
tatacataaagttataaggacaacaatgaacattggcatttgctgcaaaacaacttattatttttttcacctcaattagtatttctaattgtctatctaa |
41472891 |
T |
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| Q |
322 |
ttgcatgtttctattaaccactgttnnnnnnnnnttactattgagtttaatgatctttccatctatgct |
390 |
Q |
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| T |
41472890 |
ttgcatgtttctattaaccactgtt-caaaaaaattactattgagtttaaagatctttccatctatgct |
41472823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 4219439 - 4219549
Alignment:
| Q |
99 |
tttgtttttgacattgtaggttctattatattggaaacgtttatttcgaccctagatttttgttatgatacttttatccctcaagtgtttcaaagaattg |
198 |
Q |
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| T |
4219439 |
tttgtttgtgacattgtagattctattatatctgaaatgtttatttggactttagatttctgctattctacctttatgccataagtgtttgaaagaatta |
4219538 |
T |
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| Q |
199 |
tcatgtgtatt |
209 |
Q |
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| T |
4219539 |
tcatgtgtatt |
4219549 |
T |
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