View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_high_5 (Length: 364)
Name: NF9649_high_5
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 124 - 360
Target Start/End: Original strand, 28102663 - 28102899
Alignment:
| Q |
124 |
cctctcagcactctcttctctaaactaatgtcaggtaaatccagaaaccaacaattttaattaaacccccgagagagtgcacggaacggaggtgatggct |
223 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102663 |
cctcttagcactctcttctctaaactaatgtcaggtaaacccagaaaccaacaactttaattaaacccccgagagagtgcacggaacggaggtgatggct |
28102762 |
T |
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| Q |
224 |
attgcttgggggtggtctgttatggtgtgataggaaggtattttgtggcattgttgtcactgtgtttgggtttttgaaggcgcgactgtggccctttctt |
323 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||| |
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| T |
28102763 |
attgcttgggggtggtctgttatggtgtgacaggaaggtattttgtggcattgttgtcattgtgtttgggttttggaaggcgcggctgtggccccttctt |
28102862 |
T |
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| Q |
324 |
ttggctatcactttgtttttgtagttctctgcttctc |
360 |
Q |
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| T |
28102863 |
ttggctatcactttgtttttgtagttttgtgcttctc |
28102899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 124 - 359
Target Start/End: Complemental strand, 31712021 - 31711786
Alignment:
| Q |
124 |
cctctcagcactctcttctctaaactaatgtcaggtaaatccagaaaccaacaattttaattaaacccccgagagagtgcacggaacggaggtgatggct |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31712021 |
cctctcagcactctcttctctaaactaatgtcaggtaaacccataaaccaacaactttaattaaacctccgagagagtgcacggaacggaggtgatggct |
31711922 |
T |
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| Q |
224 |
attgcttgggggtggtctgttatggtgtgataggaaggtattttgtggcattgttgtcactgtgtttgggtttttgaaggcgcgactgtggccctttctt |
323 |
Q |
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| T |
31711921 |
attgcttgggggtggtctgttatggtgtgacatgaatgtattttgtggcattgttgtcactgtgtttgggttttggaaggcgcggttgtggccccttctt |
31711822 |
T |
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| Q |
324 |
ttggctatcactttgtttttgtagttctctgcttct |
359 |
Q |
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| T |
31711821 |
ttggctatcactttgtttttgtagttttgtgcttct |
31711786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 31712128 - 31712067
Alignment:
| Q |
17 |
cacaacatcctttcaattcccccaaattgaatttcaccttcaaactcctttcgtccttaccc |
78 |
Q |
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| T |
31712128 |
cacaacatcctttcaattctcccaaattgaatttcaccttcaaactcctttcatccttaccc |
31712067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 28102559 - 28102618
Alignment:
| Q |
19 |
caacatcctttcaattcccccaaattgaatttcaccttcaaactcctttcgtccttaccc |
78 |
Q |
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| T |
28102559 |
caacatcctttcaattcccccaaattgaatttcaccttcagactcctttcatccttaccc |
28102618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 52659640 - 52659589
Alignment:
| Q |
124 |
cctctcagcactctcttctctaaactaatgtcaggtaaatccagaaaccaac |
175 |
Q |
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| T |
52659640 |
cctctcagcactctcttctctaaactaatgtcaggtaaacccataaaccaac |
52659589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 124 - 360
Target Start/End: Original strand, 7037525 - 7037761
Alignment:
| Q |
124 |
cctctcagcactctcttctctaaactaatgtcaggtaaatccagaaaccaacaattttaattaaacccccgagagagtgcacggaacggaggtgatggct |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7037525 |
cctctcagcactctcttctctaaactaatgtcaggtaaacccagaaaccaacaactttaattaaacccccgagagagtgcacggaacggaggtgatggct |
7037624 |
T |
|
| Q |
224 |
attgcttgggggtggtctgttatggtgtgataggaaggtattttgtggcattgttgtcactgtgtttgggtttttgaaggcgcgactgtggccctttctt |
323 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||| |
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| T |
7037625 |
attgcttgggggtggtctgttatggtgtgacatgaaggtattttgtggcattgttgtcactgcgtttgggttttggaaggcgcggctgtggccccttctt |
7037724 |
T |
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| Q |
324 |
ttggctatcactttgtttttgtagttctctgcttctc |
360 |
Q |
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||| |||||||||||||||||||||| | |||||||| |
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| T |
7037725 |
ttgactatcactttgtttttgtagttttgtgcttctc |
7037761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 31567676 - 31567638
Alignment:
| Q |
124 |
cctctcagcactctcttctctaaactaatgtcaggtaaa |
162 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
31567676 |
cctctcagcactctcttctccgaactaatgtcaggtaaa |
31567638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 51400899 - 51400952
Alignment:
| Q |
124 |
cctctcagcactctcttctctaaactaatgtcaggtaaatccagaaaccaacaa |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
51400899 |
cctctcagcactctcttctctaaactaatgtcaggtaaaccaagaaaccaacaa |
51400952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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