View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_low_1 (Length: 834)
Name: NF9649_low_1
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 255 - 821
Target Start/End: Complemental strand, 36731005 - 36730433
Alignment:
| Q |
255 |
atctcacgaaaacttctggacagtataatctcattattgctttatgatttgttagagcatcattaaaatgatattatatagtatgaataatggaaatacc |
354 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36731005 |
atctcacgaaaacttcaggacagtataatctcattattgctttatgatttgttagagcatcattaaaatgatattatatagtatgaataatggaaacacc |
36730906 |
T |
|
| Q |
355 |
tttnnnnnnnnnnnn--gaataatggaaactaatgccaaaaaattatagcataaaccaaactccaaacacataaaccataacaacaa----tgccacaaa |
448 |
Q |
| |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| |
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| T |
36730905 |
tttaaaaaaaaaaaaaagaataatggaaacttatgccaaaaaattatagcataaaccaaactccaaatacataaaccataacaacaaacaatgacacaaa |
36730806 |
T |
|
| Q |
449 |
attcaaaacctaacatcacgggtaggtgtcatatgaacatatcataatgcaaggtaataacagtagtactacttttattttcctaaacaacatttatctt |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36730805 |
attcaaaacctaacatcacgggtaggtgtcatatgaacatatcataatgcaaggtaataacagtagtactacttttattttcctaaacaacatttatctt |
36730706 |
T |
|
| Q |
549 |
atatggtaaatgcaataatcataaaacttaaaaaggattaaaacaagtaacagggtaacaaactagaggttttgccaatccagcagaaaatgacgaccct |
648 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36730705 |
atacggtaaatgcaataatcataaaacttaaaaaggattaaaacaagtaacagggtaacaaactagaggttttgccaatccagcagaaaatgacgaccct |
36730606 |
T |
|
| Q |
649 |
tcttccatatcaatcttatcaccacctttaattttccattcaaaacattgaatcaatccagcaattgtcaaatgtataaccgttaaagcaagtgatgaac |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36730605 |
tcttccatatcaatcttatcaccacctttaattttccattcaaaacattgaatcaatccagcaattgtcaaatgtataaccgttaaagcaagtgatgaac |
36730506 |
T |
|
| Q |
749 |
caggacaacccctcctaccaaatccaaatggaatatacctaaaatcatcaccatccattttattcacaggttc |
821 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
36730505 |
caggacaacccctcctaccaaatccaaatggaatatacctaaaatcatcaccatccattttattcacatgttc |
36730433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 36732636 - 36732435
Alignment:
| Q |
4 |
atttccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaaggacca |
103 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
36732636 |
atttccattctctttaaatgccctattacaattgagtttaacccatccttcatgagaacgcttccaaccaatgaaagttgttttagtatgtcaaggatca |
36732537 |
T |
|
| Q |
104 |
ttatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagcagatctttaaaaattattctcaaaatttgttt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36732536 |
ttatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagtcggattagcagatctttaaaaattattctcaaaatttgttt |
36732437 |
T |
|
| Q |
204 |
ta |
205 |
Q |
| |
|
|| |
|
|
| T |
36732436 |
ta |
36732435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 36731655 - 36731609
Alignment:
| Q |
203 |
ttaagtatgctgagctagacgtggagatataacttaagtacttaaat |
249 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
36731655 |
ttaagtatgatgagctagacgtagagatataacttaagtacttaaat |
36731609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 5e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 41550374 - 41550578
Alignment:
| Q |
1 |
acgatttccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaagga |
100 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||| || || | | ||||||||||||||||| |||||| |||||| | |||| |
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|
| T |
41550374 |
acgatttccattctctttgcatgccccatcacaattgagtttaacccatccctcctgaggatgcttccaaccaatgaaaattgtttcagtgtgccgagga |
41550473 |
T |
|
| Q |
101 |
ccattatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagcagatctttaaaaattattctcaaaatttg |
200 |
Q |
| |
|
|| | | |||||| ||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| | ||||| |||||||| ||||||| ||| |
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|
| T |
41550474 |
ccttgaagaagattattggtgcaatcttcgatagtgctagagaaggcctgaatgacactagttggattagctggtctttgaaaattatcctcaaaaattg |
41550573 |
T |
|
| Q |
201 |
tttta |
205 |
Q |
| |
|
||||| |
|
|
| T |
41550574 |
tttta |
41550578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 29515396 - 29515562
Alignment:
| Q |
3 |
gatttccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaaggacc |
102 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||||||| |||||| || || | | ||||||| ||| ||||| ||| || || |||| |||||| |
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| T |
29515396 |
gatttccattctctttgcacgccc-atcacaattgagtttaatccatccttcctgaggatgcttccagccagtgaaaattggttcagcatgtcgaggacc |
29515494 |
T |
|
| Q |
103 |
attatgaagataattggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagc |
171 |
Q |
| |
|
| | ||||| ||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||| |
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|
| T |
29515495 |
-tgaagaagagtattggtgtagtcttcgaaagttctagagaaggcttggatgacactagttggattagc |
29515562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 37752412 - 37752240
Alignment:
| Q |
1 |
acgatttccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaagga |
100 |
Q |
| |
|
|||||||||||||| ||| | | || |||| |||||||||||||| |||| ||||| | || |||||||||||||||| |||| ||||||| |||| |
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|
| T |
37752412 |
acgatttccattctatttgcacgtcccatcataattgagtttaacc-atccctcatgaggacacttccaaccaatgaaaaccgtttcagtgtgttgagga |
37752314 |
T |
|
| Q |
101 |
ccattatgaaga---taattggtgcagtcttcgatggtgctagagaaggcatggatgacactagttggattagc |
171 |
Q |
| |
|
||||| |||||| | ||||||||| |||||||| ||||||||||| || |||||||||||||||||||| |
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|
| T |
37752313 |
ccattctgaagaagattattggtgcaatcttcgatagtgctagagaacatttgaatgacactagttggattagc |
37752240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 30901754 - 30901679
Alignment:
| Q |
3 |
gatttccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaa |
78 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||||||| ||||| ||||| | | |||||| ||||||||| |
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|
| T |
30901754 |
gatttccattctctttgcatgccccatcacaatttagtttaactcatccctcatgaggatgcttccgaccaatgaa |
30901679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 6261037 - 6260936
Alignment:
| Q |
7 |
tccattctctttaaatgccctatcacaattgagtttaacccatccgtcatgtgaacgcttccaaccaatgaaagttgttttagtgtgtcaaggaccatta |
106 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||| ||||| ||||| | ||||||||||||||| ||| |||||| | |||||| | ||||| || |
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|
| T |
6261037 |
tccattctctttgcacgccccatcacaattgagtttaatccatctctcatgaggacgcttccaaccaataaaaattgtttcaatgtgtcgatgaccaata |
6260938 |
T |
|
| Q |
107 |
tg |
108 |
Q |
| |
|
|| |
|
|
| T |
6260937 |
tg |
6260936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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