View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_low_11 (Length: 367)
Name: NF9649_low_11
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 351
Target Start/End: Complemental strand, 14373371 - 14373031
Alignment:
| Q |
14 |
atactacaaagataactattaacatatttaaagaaagcagtggcatatacagtctacaacgaaccaaggcttgaaaattgttcgaaactttaactacaac |
113 |
Q |
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| T |
14373371 |
atactacaaagataactattaacatatttaaagaaagcagtggcatatacagtctacaacgaaccaatgcttgaaaattgttcgaaactctaactacaac |
14373272 |
T |
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| Q |
114 |
catgtcaatcctcgttggtaaaacctcgtagtattactcgtcagcacaactaaacatgaccaatcggtgtcaattcaacaaaacaaatattaatgctcaa |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14373271 |
catgtcaatcctcgttggtaaaaccttgtagtattactcgtcagcacaactaaacatgaccaatcagtgtcaattcaacaaaacaaatattaatgctcaa |
14373172 |
T |
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| Q |
214 |
aactcaaacaacaaccaatgtcatacctcgtaattagaacctcaaaaaacaaga---acaaatattagtactcaaaattaaactgtttttatcaaattaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14373171 |
aactcaaacaacaaccaatgtcatacctcgtaattagaacctcaaaaaacaagaacaacaaatattagtactcaaaattaaactgtttttatcaaattaa |
14373072 |
T |
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| Q |
311 |
caccaatcttgaacttctacttaaaggtgacgacattgatc |
351 |
Q |
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| T |
14373071 |
caccaatcttgaacttctacttaaaggtgacgacattgatc |
14373031 |
T |
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