View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9649_low_15 (Length: 309)
Name: NF9649_low_15
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_low_15 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 309
Target Start/End: Original strand, 2483855 - 2484158
Alignment:
| Q |
5 |
ttgattattgagtttcttcaggtgcagcaagtggcatatcttgtgtttgcaattttggtttcttcttaaaataggcaccgcttgcaacatttggattgag |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2483855 |
ttgattattgagtttcttcatgtgcagcaagtggcatatcttgaatt-gcaattttggtttcttcttaaaataggcaccgcttgcaacatttggattgag |
2483953 |
T |
|
| Q |
105 |
aaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatttgaagttattggattaattgagaggcggtt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2483954 |
aaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatttgaagttattggattaattgagaggcggtt |
2484053 |
T |
|
| Q |
205 |
tggttataagaaaaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggtgataaattgtatatttagttcgaatgcaaaa |
304 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2484054 |
tggtaataagaaaaaatattacgatccactcagaaaggcttgtttggtgtggttgtgatgcaatttggtgataaattgtatatttagttcgaatgcaaaa |
2484153 |
T |
|
| Q |
305 |
tgaat |
309 |
Q |
| |
|
||||| |
|
|
| T |
2484154 |
tgaat |
2484158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 75 - 285
Target Start/End: Complemental strand, 17927621 - 17927413
Alignment:
| Q |
75 |
ataggcaccgcttgcaacatttggattgagaaagttgtcgttttaaataaaaagagtttgattgagtatacaatttggaatttgctaccacaattgcatt |
174 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||| |||||||| ||| |||| ||||| ||| ||||||||||||||||||||||||||| | ||| || |
|
|
| T |
17927621 |
atagacaccacttgcaacatt-ggattgagaaaattgtcgtt--aaaaaaaaggagttggatcgagtatacaatttggaatttgctaccatagttgtgtt |
17927525 |
T |
|
| Q |
175 |
tgaagttattggattaattgagaggcggtttggttataagaa-aaaatattgcgatccactcagaatggtttgtttggtgtggttgtgatgcaatttggt |
273 |
Q |
| |
|
||||||||||||||||||| |||||| | | ||| ||||||| |||||| | |||||||||| | |||| ||||||| |||||| ||| ||||| | |
|
|
| T |
17927524 |
tgaagttattggattaattaagaggcagatcggtaataagaaaaaaatagggagatccactcaattttgtttatttggtgcggttgttatgaaattttat |
17927425 |
T |
|
| Q |
274 |
gataaattgtat |
285 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17927424 |
gataaattgtat |
17927413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University