View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_low_20 (Length: 283)
Name: NF9649_low_20
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48133874 - 48134117
Alignment:
| Q |
1 |
cgtggttctagcccccaacgcccgtttttgaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttagaatttaatttatggtgacaaattg |
100 |
Q |
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| T |
48133874 |
cgtggttctagcccccaacgcccgtttatgaaaagctagaaaatgaagcttttgcggcaactcaacgccagtttggaatttaatttatggtgacaaattg |
48133973 |
T |
|
| Q |
101 |
gaaattccctaattacccatgacttgttttctattaccgtgttcctttcaacagcacaagccacattgatattgttt--------aatttctcaatcgta |
192 |
Q |
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| T |
48133974 |
gaaattccctaattacccatgacttgttttctattaccgtgttcctttcaacagcacaagccacattgatattgtttaatttctcaatttctcaattgta |
48134073 |
T |
|
| Q |
193 |
aggacagagaagattttcgtttcattactgtgatgatttttaca |
236 |
Q |
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| T |
48134074 |
aggacaaataagattttcgtttcattacagtgatgatttataca |
48134117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 4069167 - 4068994
Alignment:
| Q |
1 |
cgtggttctagccccc-aacgcccgtttttgaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttagaatttaatttatggtgacaaatt |
99 |
Q |
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| T |
4069167 |
cgtggttctagccccccaacgcccgtttctgaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttgaaatttaatttatggtgacaaatt |
4069068 |
T |
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| Q |
100 |
ggaaattccctaattacccatgacttgttttctattaccgtgttcctttcaacagcacaagccacattgatatt |
173 |
Q |
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| T |
4069067 |
gaaaattccctaattacccatgacttgttttctattaccgtgttcatttcaacaacacaagccgcattgatatt |
4068994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 4068980 - 4068952
Alignment:
| Q |
158 |
aagccacattgatattgtttaatttctca |
186 |
Q |
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| T |
4068980 |
aagccacattgatattgtttaatttctca |
4068952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 31563512 - 31563339
Alignment:
| Q |
13 |
ccccaacgcccgtttttgaaaagctagaaaatgaagcttttgcggcaactcaacaccagtttagaatttaatttatggtgacaaattggaaattccctaa |
112 |
Q |
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||||||||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| |
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| T |
31563512 |
ccccaacgcccgtttctaaaaagctagaaaatgaaccttttgcggcaactcaacgccagtttggaatttaatttatggtgataaattggaaattccttaa |
31563413 |
T |
|
| Q |
113 |
ttacccatgacttgttttctattaccgtgttcctttcaacagcacaagccacattgatattgtttaatttctcaat |
188 |
Q |
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| T |
31563412 |
ttacccatgacttgttttc--ttaccgtgttgctttcaacatcaaaagccacattgatattgtttaatttctcaat |
31563339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 31563321 - 31563275
Alignment:
| Q |
190 |
gtaaggacagagaagattttcgtttcattactgtgatgatttttaca |
236 |
Q |
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| T |
31563321 |
gtaaggacatagaagattttcgtttcattacagtgatgatttataca |
31563275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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