View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_low_21 (Length: 280)
Name: NF9649_low_21
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 10988286 - 10988032
Alignment:
| Q |
18 |
acaataacgaataaaggtgatggctggctatacaagtaaatagcagcagcgatggaacatacatggactactcaacgttgcaccaacaattaaattttga |
117 |
Q |
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| T |
10988286 |
acaataacgaataaaggtgatggctggctatacaagtaaatagcagcagcgatggaacatatatggactactcaacgttgcaccaaaaattaaattttga |
10988187 |
T |
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| Q |
118 |
ttcaccgaatgagtatgtcaagactaaaacaatttgatttgtattcaactattaatttcagttacttgtatgatggaatctaccatggaaaataatcatg |
217 |
Q |
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| T |
10988186 |
ttcaccgaatgagtatgtcaagactaaaacaatttgatttgtattcaactattaatttcagttacttgtatgatggaatctaccatggaaaataatcatg |
10988087 |
T |
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| Q |
218 |
tataggcactgccgctgctgtatgaacggaaagggaagcaccggcgccaacacca |
272 |
Q |
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| T |
10988086 |
tataggcactgccgccgctgtatgaacggaaagggaagcaccggcgccagcacca |
10988032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 49737526 - 49737322
Alignment:
| Q |
18 |
acaataacgaataaaggtgatggctggctatacaagtaaatagcagcagcgatggaacatacatggactactcaacgttgcaccaacaattaaattttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||||||||||| |
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| T |
49737526 |
acaataacgaataaaggtgatggctggctatacaagtaaatagcagcagcgatggaacatgaatggacaactcaatgtttcaccaacaattaaattttga |
49737427 |
T |
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| Q |
118 |
ttcaccgaatgagtatgtcaagactaaaacaatttgatttgtattcaactattaatttcagttacttgtatgatggaatctaccatggaaaataatcatg |
217 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
49737426 |
ttcaccgaatgggtatgtcaagactaaaacagtttgatttgtattcaacttttaatttcagttacttgtatgatggaatctaccatgggaaataactatg |
49737327 |
T |
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| Q |
218 |
tatag |
222 |
Q |
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||||| |
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| T |
49737326 |
tatag |
49737322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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