View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_low_22 (Length: 277)
Name: NF9649_low_22
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 38223596 - 38223337
Alignment:
| Q |
18 |
accttctgctttccatgcctcagcgtaaaatcgtacgtggaaaaaggttcaatcttctataccagtttgttcattaaagagcatccataatactcaatac |
117 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38223596 |
accttctgctttccatgcctcagcgtaaaatcgtatgtggaaaaaggttcaatcttctataccagtttgttcattaaagagcatccataatactcaatat |
38223497 |
T |
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| Q |
118 |
tctttgcagatattcaccaacgcagatcacacacatgcgattgaagttctcagcaggcttggcttggaagattgctttgagggcattatatgcttcgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38223496 |
tctttgcagatattcaccaacgcagatcacacacatgcgattgaagttctcagcaggcttggcttggaagattgctttgagggcattatatgcttcgaaa |
38223397 |
T |
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| Q |
218 |
cgcttaaccctatcaactcctaccaacgaatcctctgtaaaccatctgtggaagcctttg |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38223396 |
cgcttaaccctatcaactcctaccaacgaatcctctgtaaaccatctgtggaagcctttg |
38223337 |
T |
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