View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_low_27 (Length: 239)
Name: NF9649_low_27
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 53884201 - 53883981
Alignment:
| Q |
1 |
ttcacgattttggaattgctctaataacaacaatggtttcacccttttataataataaatagcttgtgagnnnnnnnnnnnagctttttctcaggctatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53884201 |
ttcacgattttggaattgctctaataacaacaatggtttcacccttttgtaataataaatagcttgtgagtttttttttttagctttttctcaggctatg |
53884102 |
T |
|
| Q |
101 |
taatattaatgttgaatgaatttaatctatgaatgtatagtagaatagtattagtagttagtactaacccttgtgcttgaattgcacgaaggttannnnn |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53884101 |
taatattaatgttgaatgaatttaatctatgaatgtatagtagaatagtattagtagttagt----acccttgtgcttgaattgcacgaaggttattttt |
53884006 |
T |
|
| Q |
201 |
nnnnacatgtttcccattttggagg |
225 |
Q |
| |
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||||||||||||||||||||| |
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| T |
53884005 |
ttttacatgtttcccattttggagg |
53883981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 53890315 - 53890095
Alignment:
| Q |
1 |
ttcacgattttggaattgctctaataacaacaatggtttcacccttttataataataaatagcttgtgagnnnnnnnnnnnagctttttctcaggctatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53890315 |
ttcacgattttggaattgctctaataacaacaatggtttcacccttttgtaataataaatagcttgtgagtttttttttttagctttttctcaggctatg |
53890216 |
T |
|
| Q |
101 |
taatattaatgttgaatgaatttaatctatgaatgtatagtagaatagtattagtagttagtactaacccttgtgcttgaattgcacgaaggttannnnn |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53890215 |
taatattaatgttgaatgaatttaatctatgaatgtatagtagaatagtattagtagttagt----acccttgtgcttgaattgcacgaaggttattttt |
53890120 |
T |
|
| Q |
201 |
nnnnacatgtttcccattttggagg |
225 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
53890119 |
ttttacatgtttcccattttggagg |
53890095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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