View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9649_low_29 (Length: 225)

Name: NF9649_low_29
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9649_low_29
NF9649_low_29
[»] scaffold0053 (2 HSPs)
scaffold0053 (1-173)||(73950-74122)
scaffold0053 (21-166)||(74112-74257)
[»] scaffold0239 (1 HSPs)
scaffold0239 (21-173)||(2350-2502)
[»] chr4 (21 HSPs)
chr4 (170-225)||(10442803-10442858)
chr4 (173-225)||(31078833-31078885)
chr4 (174-225)||(22199261-22199312)
chr4 (170-225)||(24128235-24128290)
chr4 (174-225)||(36072947-36072998)
chr4 (174-225)||(49387902-49387953)
chr4 (174-224)||(2624837-2624887)
chr4 (171-225)||(21802336-21802390)
chr4 (171-225)||(47290063-47290117)
chr4 (168-225)||(33530702-33530759)
chr4 (173-225)||(4751445-4751497)
chr4 (170-225)||(44893422-44893477)
chr4 (175-225)||(7745126-7745176)
chr4 (171-225)||(24392664-24392718)
chr4 (172-225)||(36073348-36073401)
chr4 (174-225)||(46441844-46441895)
chr4 (171-225)||(23964479-23964533)
chr4 (172-225)||(50156592-50156645)
chr4 (173-225)||(53123029-53123082)
chr4 (173-225)||(37934955-37935007)
chr4 (173-225)||(44893227-44893280)
[»] chr8 (28 HSPs)
chr8 (171-225)||(32064742-32064796)
chr8 (172-224)||(15187558-15187610)
chr8 (174-225)||(34665382-34665433)
chr8 (170-225)||(40780143-40780198)
chr8 (171-225)||(17841864-17841918)
chr8 (174-223)||(24211569-24211618)
chr8 (172-225)||(26042130-26042183)
chr8 (172-225)||(42755056-42755109)
chr8 (174-225)||(20091815-20091866)
chr8 (174-225)||(32393858-32393909)
chr8 (171-221)||(1645983-1646033)
chr8 (184-225)||(38016981-38017022)
chr8 (177-225)||(8453837-8453885)
chr8 (174-225)||(35353041-35353092)
chr8 (175-225)||(14128865-14128915)
chr8 (171-225)||(31347796-31347850)
chr8 (171-225)||(39772815-39772869)
chr8 (172-225)||(37986069-37986122)
chr8 (165-225)||(6108247-6108307)
chr8 (172-225)||(7017879-7017932)
chr8 (183-224)||(7021987-7022028)
chr8 (170-225)||(24844872-24844927)
chr8 (174-225)||(27835467-27835518)
chr8 (174-225)||(37132672-37132723)
chr8 (173-224)||(41819793-41819844)
chr8 (179-225)||(25581253-25581299)
chr8 (175-225)||(27782131-27782181)
chr8 (174-218)||(30055543-30055587)
[»] chr7 (17 HSPs)
chr7 (172-225)||(15329271-15329324)
chr7 (172-225)||(45637710-45637763)
chr7 (173-225)||(15577864-15577916)
chr7 (174-225)||(4974749-4974800)
chr7 (174-225)||(42611811-42611862)
chr7 (174-225)||(48880941-48880992)
chr7 (174-225)||(3961979-3962030)
chr7 (174-225)||(20010111-20010162)
chr7 (174-225)||(24394972-24395023)
chr7 (173-225)||(35444557-35444609)
chr7 (174-225)||(34482835-34482886)
chr7 (172-225)||(37477094-37477147)
chr7 (174-225)||(25167864-25167915)
chr7 (165-225)||(15238373-15238433)
chr7 (173-225)||(18036977-18037029)
chr7 (177-225)||(36790480-36790528)
chr7 (178-225)||(29737143-29737190)
[»] chr6 (15 HSPs)
chr6 (172-225)||(28675146-28675199)
chr6 (173-225)||(33695341-33695393)
chr6 (173-225)||(33696695-33696747)
chr6 (170-225)||(18365587-18365642)
chr6 (170-225)||(18370851-18370906)
chr6 (172-225)||(6127273-6127326)
chr6 (172-225)||(23291098-23291151)
chr6 (174-225)||(17176035-17176086)
chr6 (174-225)||(17705479-17705530)
chr6 (174-225)||(25986930-25986981)
chr6 (173-225)||(18889711-18889762)
chr6 (174-225)||(6031755-6031806)
chr6 (185-224)||(32702216-32702255)
chr6 (171-225)||(11548602-11548656)
chr6 (177-209)||(8515755-8515787)
[»] chr5 (19 HSPs)
chr5 (172-225)||(6043525-6043578)
chr5 (170-225)||(2477632-2477687)
chr5 (173-225)||(3362777-3362829)
chr5 (173-225)||(38899740-38899792)
chr5 (170-225)||(4892198-4892253)
chr5 (170-225)||(8145371-8145426)
chr5 (174-225)||(11361145-11361196)
chr5 (172-222)||(14138666-14138716)
chr5 (169-225)||(22913068-22913124)
chr5 (174-225)||(12850801-12850852)
chr5 (174-225)||(25398238-25398289)
chr5 (174-225)||(33584343-33584394)
chr5 (174-224)||(4434022-4434072)
chr5 (169-225)||(3522020-3522076)
chr5 (174-225)||(37321807-37321859)
chr5 (174-225)||(12614747-12614798)
chr5 (165-225)||(17545699-17545759)
chr5 (186-225)||(10458409-10458448)
chr5 (178-225)||(27481830-27481877)
[»] scaffold0471 (1 HSPs)
scaffold0471 (170-225)||(12838-12893)
[»] scaffold0178 (1 HSPs)
scaffold0178 (174-225)||(11621-11672)
[»] chr3 (26 HSPs)
chr3 (174-225)||(6041884-6041935)
chr3 (170-225)||(11347264-11347319)
chr3 (171-225)||(2754714-2754768)
chr3 (167-225)||(3137428-3137486)
chr3 (172-225)||(3574541-3574594)
chr3 (171-224)||(34482925-34482978)
chr3 (173-225)||(42297352-42297404)
chr3 (174-225)||(37217067-37217118)
chr3 (174-224)||(3456064-3456114)
chr3 (172-222)||(33113791-33113841)
chr3 (174-224)||(48160905-48160955)
chr3 (174-225)||(30385011-30385062)
chr3 (174-224)||(8320599-8320649)
chr3 (171-225)||(37522050-37522104)
chr3 (185-225)||(42921154-42921194)
chr3 (174-225)||(19650914-19650965)
chr3 (175-225)||(9797043-9797093)
chr3 (172-218)||(24343545-24343591)
chr3 (173-225)||(22426358-22426410)
chr3 (174-225)||(33145713-33145763)
chr3 (174-225)||(41224233-41224284)
chr3 (168-222)||(33839525-33839579)
chr3 (177-211)||(40327878-40327912)
chr3 (186-224)||(47738117-47738155)
chr3 (184-225)||(33839755-33839796)
chr3 (172-205)||(47402630-47402663)
[»] chr1 (17 HSPs)
chr1 (170-225)||(16045812-16045867)
chr1 (174-225)||(40214988-40215039)
chr1 (171-225)||(18404439-18404493)
chr1 (172-224)||(19015402-19015454)
chr1 (174-225)||(9910307-9910358)
chr1 (174-225)||(44094698-44094749)
chr1 (174-224)||(36966723-36966773)
chr1 (174-224)||(37821849-37821899)
chr1 (172-225)||(25463674-25463727)
chr1 (172-225)||(25973412-25973465)
chr1 (169-225)||(3559612-3559668)
chr1 (165-225)||(40273693-40273753)
chr1 (174-225)||(32000281-32000332)
chr1 (173-225)||(41876456-41876508)
chr1 (174-225)||(6883487-6883538)
chr1 (173-211)||(34519757-34519795)
chr1 (173-211)||(51620979-51621017)
[»] scaffold0096 (1 HSPs)
scaffold0096 (171-225)||(41008-41062)
[»] chr2 (13 HSPs)
chr2 (171-225)||(9293590-9293644)
chr2 (170-224)||(13354842-13354896)
chr2 (174-224)||(21936081-21936131)
chr2 (172-225)||(23268076-23268129)
chr2 (168-225)||(35160751-35160808)
chr2 (173-225)||(7475522-7475574)
chr2 (175-225)||(10661888-10661938)
chr2 (174-225)||(33380207-33380258)
chr2 (171-225)||(31174848-31174902)
chr2 (172-225)||(43330910-43330963)
chr2 (173-225)||(14941380-14941432)
chr2 (176-225)||(21393702-21393751)
chr2 (172-225)||(27847630-27847683)
[»] scaffold0204 (1 HSPs)
scaffold0204 (169-225)||(4391-4447)
[»] scaffold0085 (1 HSPs)
scaffold0085 (174-225)||(47850-47901)
[»] scaffold0228 (3 HSPs)
scaffold0228 (185-225)||(8413-8453)
scaffold0228 (185-225)||(15995-16035)
scaffold0228 (185-225)||(25947-25987)
[»] scaffold0665 (1 HSPs)
scaffold0665 (175-225)||(3069-3119)


Alignment Details
Target: scaffold0053 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 74122 - 73950
Alignment:
Q  1 aatgatctttactttaaaacttgtaatgatttgtacccacttggcatatgatccgaaagattacgaaattcattaaaagtttcataaatccaacaaattg 100  Q
    ||||||||||||||| |||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74122 aatgatctttactttgaaacttgtaatgatctatttccacttggcatatgatccgaaagattacgaaattcattaaaagtttcataaatccaacaaattg 74023  T
Q  101 aagaatattgaaccaagtttcttttttatttgttggttactcgaaacaccaattcgatgatctttaatttaaa 173  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74022 aagaatattgaaccaagtttattttttatttgttggttactcgaaacaccaattcgatgatctttaatttaaa 73950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 74257 - 74112
Alignment:
Q  21 ttgtaatgatttgtacccacttggcatatgatccgaaagattacgaaattcattaaaagtttcataaatccaacaaattgaagaatattgaaccaagttt 120  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  74257 ttgtaatgatctatacccacttggcatatgatcagaaagattacgaaattcattggaagtttcataaatccaacaaattgaagaatattgaacctagttt 74158  T
Q  121 cttttttatttgttggttactcgaaacaccaattcgatgatcttta 166  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||    
T  74157 ctttttcatttgttggttactcgaaacaccaattcaatgatcttta 74112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 2502 - 2350
Alignment:
Q  21 ttgtaatgatttgtacccacttggcatatgatccgaaagattacgaaattcattaaaagtttcataaatccaacaaattgaagaatattgaaccaagttt 120  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  2502 ttgtaatgatctatacccacttggcatatgatcagaaagattacgaaattcattgaaagtttcatgaatccaacaaattgaagaatattgaaccaagttt 2403  T
Q  121 cttttttatttgttggttactcgaaacaccaattcgatgatctttaatttaaa 173  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2402 cttttttatttgttggttactcgaaacaccaattagatgatctttaatttaaa 2350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 10442858 - 10442803
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10442858 taaagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 10442803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 31078885 - 31078833
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31078885 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 31078833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 22199261 - 22199312
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22199261 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 22199312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 24128235 - 24128290
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  24128235 taaagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 24128290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 36072947 - 36072998
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36072947 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 36072998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 49387953 - 49387902
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49387953 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 49387902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 2624837 - 2624887
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2624837 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 2624887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 21802390 - 21802336
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  21802390 aaagagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgac 21802336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 47290063 - 47290117
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  47290063 aaagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 47290117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 33530759 - 33530702
Alignment:
Q  168 tttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  33530759 tttatagagcaatgctatatatcaagaaagattttatcaagaaaaattcaagaatgac 33530702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 4751445 - 4751497
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  4751445 agagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgac 4751497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 44893422 - 44893477
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  44893422 taaagagcaatgctatatatcaagaaagattttttcaaaaaaatttcaagaatgac 44893477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 7745176 - 7745126
Alignment:
Q  175 agcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  7745176 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 7745126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 24392664 - 24392718
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  24392664 aaagagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgac 24392718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 36073348 - 36073401
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  36073348 aagaggaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 36073401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 46441844 - 46441895
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  46441844 gagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgac 46441895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 23964533 - 23964479
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||  |||||||||||||||||||||||| ||||||| |||||||||    
T  23964533 aaagagcaatgttatatatcaagaaagattttatcaaaaaaattttaagaatgac 23964479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 50156645 - 50156592
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| |||||| |||||||||||| |||||||||||| |||||||||    
T  50156645 aagagcaatgctatatattaagaaagattttttcaagaaaattttaagaatgac 50156592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 53123029 - 53123082
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatc-aagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||| || ||||||||||||||||||||    
T  53123029 agagcaatgctatatatcaagaaagattttttcaaagaaaatttcaagaatgac 53123082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 37935007 - 37934955
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||| |||||||||||||| ||||| |||||||||||    
T  37935007 agagcaatgctatatatcaaaaaagattttatcaaaaaaatgtcaagaatgac 37934955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 44893280 - 44893227
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatc-aagaaaatttcaagaatgac 225  Q
    |||||||||| |||||| |||||||||||| || || |||||||||||||||||    
T  44893280 agagcaatgctatatattaagaaagattttttcaaaaaaaatttcaagaatgac 44893227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 32064742 - 32064796
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32064742 aaagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 32064796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 15187558 - 15187610
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15187558 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 15187610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 34665382 - 34665433
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34665382 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 34665433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 40780198 - 40780143
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  40780198 taaagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 40780143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 17841918 - 17841864
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  17841918 aaagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 17841864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 24211618 - 24211569
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatg 223  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24211618 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatg 24211569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 26042183 - 26042130
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  26042183 aagagcaatgctatatattaagaaagattttatcaagaaaatttcaagaatgac 26042130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 42755109 - 42755056
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  42755109 aagagcaatgatatatatcaagaaagattttatcaagaaaatttcaagaatgac 42755056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 20091866 - 20091815
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  20091866 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgac 20091815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 32393858 - 32393909
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  32393858 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 32393909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 1646033 - 1645983
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaa 221  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  1646033 aaagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaa 1645983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 38016981 - 38017022
Alignment:
Q  184 atatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38016981 atatatcaagaaagattttatcaagaaaatttcaagaatgac 38017022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 8453837 - 8453885
Alignment:
Q  177 caatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  8453837 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 8453885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 35353041 - 35353092
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  35353041 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 35353092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 14128865 - 14128915
Alignment:
Q  175 agcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  14128865 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgac 14128915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 31347850 - 31347796
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||||    
T  31347850 aaagagcaatgctatatatcaagaaatattttctcaagaaaaattcaagaatgac 31347796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 39772869 - 39772815
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||  ||||||||||||| |||||||||| |||||||||||||||||    
T  39772869 aaagagcaatgttatatatcaagaaatattttatcaaaaaaatttcaagaatgac 39772815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 37986122 - 37986069
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  37986122 aagagtaatgctatatatcaagaaagattttatcaaaaaaattttaagaatgac 37986069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 6108307 - 6108247
Alignment:
Q  165 taatttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||| ||||||||||  ||||||||||||||||||| | |||||||||| |||||||||    
T  6108307 taatttgaagagcaatgttatatatcaagaaagatttttttaagaaaattttaagaatgac 6108247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 7017932 - 7017879
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| |||||||| |||||||||| | ||||||| ||||||||||||    
T  7017932 aagagcaatgctatatatcatgaaagattttcttaagaaaaattcaagaatgac 7017879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 7021987 - 7022028
Alignment:
Q  183 aatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  7021987 aatatatcaagaaagattttctcaagaaaaattcaagaatga 7022028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 24844927 - 24844872
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||| ||||| | ||||||||||| ||||||| ||||||| ||||||||||||    
T  24844927 taaagagaaatgctacatatcaagaaatattttattaagaaaaattcaagaatgac 24844872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 27835518 - 27835467
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||| |||||| |||| ||||||| ||||||||||||    
T  27835518 gagcaatgctatatatcaataaagatcttattaagaaaaattcaagaatgac 27835467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 37132723 - 37132672
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||| ||| ||||||||||||||| || |||||||||    
T  37132723 gagcaatgctatatatcaaaaaatattttatcaagaaaaatttaagaatgac 37132672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 41819844 - 41819793
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    |||||||||  |||||||||||||||||||||||||||  ||| ||||||||    
T  41819844 agagcaatgttatatatcaagaaagattttatcaagaatgttttaagaatga 41819793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 25581299 - 25581253
Alignment:
Q  179 atgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||| |||||||||||||| |||||  ||||||||||||||||||||    
T  25581299 atgctatatatcaagaaagtttttacgaagaaaatttcaagaatgac 25581253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 27782181 - 27782131
Alignment:
Q  175 agcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||| ||||||||||||| ||||||||||||||  ||||| ||||||    
T  27782181 agcaatgctatatatcaagaaatattttatcaagaaagattcaataatgac 27782131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 30055543 - 30055587
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaa 218  Q
    ||||||||| ||||| |||| ||||||||||||| ||||||||||    
T  30055543 gagcaatgctatataccaaggaagattttatcaaaaaaatttcaa 30055587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 15329271 - 15329324
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15329271 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 15329324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 45637710 - 45637763
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45637710 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 45637763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 15577916 - 15577864
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15577916 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 15577864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 4974800 - 4974749
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4974800 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 4974749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 42611811 - 42611862
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42611811 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 42611862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 48880992 - 48880941
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48880992 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 48880941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 3961979 - 3962030
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  3961979 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 3962030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 20010162 - 20010111
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  20010162 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 20010111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 24394972 - 24395023
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  24394972 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 24395023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 35444557 - 35444609
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| |||||| |||||||||||| ||||||||||||||||||||||    
T  35444557 agagcaatgctatatattaagaaagattttttcaagaaaatttcaagaatgac 35444609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 34482835 - 34482886
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  34482835 gagcaatgctatatatcaagaaagattttattaagaaaattttaagaatgac 34482886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 37477147 - 37477094
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| ||||||||||||||||||| ||||||||| || |||||||||    
T  37477147 aagagcaatgctatatatcaagaaagattttctcaagaaaaatttaagaatgac 37477094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 25167915 - 25167864
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||| | |||||||||| |||||||||    
T  25167915 gagcaatgctatatatcaagaaagatttttttaagaaaattttaagaatgac 25167864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 15238373 - 15238433
Alignment:
Q  165 taatttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||| || ||||||||| ||||||||||||| | ||| ||||||||| ||||||||||||    
T  15238373 taattaaatgagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgac 15238433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 18036977 - 18037029
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||  ||||||||||||||||||| ||||||||| || |||||||||    
T  18036977 agagcaatgatatatatcaagaaagattttttcaagaaaaatttaagaatgac 18037029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 36790528 - 36790480
Alignment:
Q  177 caatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||| |||||||||||||| |||||||||||||| || |||||||||    
T  36790528 caatgctatatatcaagaaagtttttatcaagaaaaatttaagaatgac 36790480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 29737143 - 29737190
Alignment:
Q  178 aatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||| ||||||||||||||||||| | |||||||||| |||||||||    
T  29737143 aatgctatatatcaagaaagatttttttaagaaaattttaagaatgac 29737190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 28675146 - 28675199
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28675146 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 28675199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 33695393 - 33695341
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33695393 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 33695341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 33696695 - 33696747
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33696695 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 33696747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 18365642 - 18365587
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  18365642 taaagagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 18365587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 18370906 - 18370851
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  18370906 taaagagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 18370851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 6127273 - 6127326
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  6127273 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 6127326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 23291151 - 23291098
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  23291151 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 23291098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 17176086 - 17176035
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  17176086 gagcaatgctatatatcaagaaagattttatcaataaaatttcaagaatgac 17176035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 17705530 - 17705479
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  17705530 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 17705479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 25986930 - 25986981
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  25986930 gagcaatgctatatatcaagaaagattttattaagaaaatttcaagaatgac 25986981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 18889762 - 18889711
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  18889762 agagcaatgctatatatcaagaaagattt-atcaagaaaatttcaagaatgac 18889711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 6031806 - 6031755
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| |||||||||||||||||| ||||| ||||||| |||||||||    
T  6031806 gagcaatgctatatatcaagaaagatttcatcaataaaattttaagaatgac 6031755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 32702216 - 32702255
Alignment:
Q  185 tatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  32702216 tatatcaagaaagattttttcatgaaaatttcaagaatga 32702255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 11548656 - 11548602
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||| | ||| ||||||||||||| ||||| ||||||||| ||||||||||||    
T  11548656 aaagagtattgctatatatcaagaaaaattttctcaagaaaaattcaagaatgac 11548602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 8515787 - 8515755
Alignment:
Q  177 caatgcaatatatcaagaaagattttatcaaga 209  Q
    |||||| ||||||||||||||||||||||||||    
T  8515787 caatgctatatatcaagaaagattttatcaaga 8515755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 6043578 - 6043525
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6043578 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 6043525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 2477632 - 2477687
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  2477632 taaagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 2477687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 3362777 - 3362829
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  3362777 agagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgac 3362829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 38899792 - 38899740
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  38899792 agagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgac 38899740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 4892198 - 4892253
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  4892198 taaagagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 4892253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 8145371 - 8145426
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  8145371 taaagaggaatgttatatatcaagaaagattttatcaagaaaatttcaagaatgac 8145426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 11361196 - 11361145
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  11361196 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 11361145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 14138666 - 14138716
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaat 222  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  14138666 aagagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaat 14138716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 22913124 - 22913068
Alignment:
Q  169 ttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  22913124 ttaatgagcaatgctatatatcaagaaagattttttcaagaaaaattcaagaatgac 22913068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 12850801 - 12850852
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||    
T  12850801 gagcaatgctatatatcaagaaagattttatcaagaaaattccaaaaatgac 12850852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 25398238 - 25398289
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  25398238 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 25398289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 33584394 - 33584343
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  33584394 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 33584343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 4434072 - 4434022
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  4434072 gagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatga 4434022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 3522076 - 3522020
Alignment:
Q  169 ttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||| ||||||||  ||||||||||||||||||| ||||||||||||||| ||||||    
T  3522076 ttaatgagcaatgttatatatcaagaaagattttttcaagaaaatttcaaaaatgac 3522020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 37321859 - 37321807
Alignment:
Q  174 gagcaatgcaatatatc-aagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  37321859 gagcaatgctatatatctaagaaagattttatcaagaaaattttaagaatgac 37321807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 12614798 - 12614747
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||| ||||||||||||||  ||||||||||||    
T  12614798 gagcaatgctatatatcaagaaatattttatcaagaaagattcaagaatgac 12614747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 17545759 - 17545699
Alignment:
Q  165 taatttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||| || ||||||||| ||||||||||||| | ||| ||||||||| ||||||||||||    
T  17545759 taattaaatgagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgac 17545699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 10458409 - 10458448
Alignment:
Q  186 atatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  10458409 atatcaagaaaaattttatcaagaaaaattcaagaatgac 10458448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 27481830 - 27481877
Alignment:
Q  178 aatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||| || ||| |||||||||||||||||||||| ||||||||||||    
T  27481830 aatgctatgtattaagaaagattttatcaagaaaaattcaagaatgac 27481877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 12838 - 12893
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  12838 taaagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 12893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 11621 - 11672
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11621 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 11672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 6041884 - 6041935
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6041884 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 6041935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 11347264 - 11347319
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  11347264 taaagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 11347319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 2754714 - 2754768
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  2754714 aaagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 2754768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 3137486 - 3137428
Alignment:
Q  167 atttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  3137486 atttcaagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 3137428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 3574594 - 3574541
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  3574594 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 3574541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 34482978 - 34482925
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  34482978 aaagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 34482925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 42297352 - 42297404
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  42297352 agagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 42297404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 37217118 - 37217067
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  37217118 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 37217067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 3456064 - 3456114
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  3456064 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 3456114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 33113791 - 33113841
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaat 222  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  33113791 aagagcaatgctatatatcaagaaagattttattaagaaaatttcaagaat 33113841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 48160905 - 48160955
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  48160905 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 48160955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 30385011 - 30385062
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  30385011 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaaaaatgac 30385062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 8320649 - 8320599
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  8320649 gagcaatgttatatatcaagaaagattttatcaagaaaattttaagaatga 8320599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 37522050 - 37522104
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| | ||||||||||||||||||| |||||||||||| |||||||||    
T  37522050 aaagagcaatactatatatcaagaaagattttttcaagaaaattttaagaatgac 37522104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 42921154 - 42921194
Alignment:
Q  185 tatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  42921154 tatatcaagaaagattttatcaagaaaattttaagaatgac 42921194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 19650965 - 19650914
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||  |||||| ||||||||||||||||||||||||| |||||||||    
T  19650965 gagcaatgttatatattaagaaagattttatcaagaaaattttaagaatgac 19650914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 9797093 - 9797043
Alignment:
Q  175 agcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||  ||||||||||||||||||| ||||||||| ||||||||||||    
T  9797093 agcaatgttatatatcaagaaagattttctcaagaaaaattcaagaatgac 9797043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 24343545 - 24343591
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaa 218  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||    
T  24343545 aagagcaatgctatatattaagaaagattttatcaagaaaaattcaa 24343591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 22426410 - 22426358
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||  |||||| ||||||||||||||||||||||||| || ||||||    
T  22426410 agagcaatgttatatattaagaaagattttatcaagaaaattttaaaaatgac 22426358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 33145713 - 33145763
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||| || ||||||| |||||||||    
T  33145713 gagcaatgctatatatcaagaaagattttattaa-aaaattttaagaatgac 33145763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 41224233 - 41224284
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||| ||| |||||| |||||||||||| ||||||||| ||||||||||||    
T  41224233 gagcactgctatatattaagaaagattttctcaagaaaaattcaagaatgac 41224284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 33839525 - 33839579
Alignment:
Q  168 tttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaat 222  Q
    ||||||||||||||  |||||| ||||||||||||||||| |||| || ||||||    
T  33839525 tttaaagagcaatgttatatattaagaaagattttatcaaaaaaaatttaagaat 33839579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 40327878 - 40327912
Alignment:
Q  177 caatgcaatatatcaagaaagattttatcaagaaa 211  Q
    |||||| ||||||||||||||||||||||||||||    
T  40327878 caatgctatatatcaagaaagattttatcaagaaa 40327912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 47738117 - 47738155
Alignment:
Q  186 atatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  47738117 atatcaagaaagattttatcaagaaatattcaagaatga 47738155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 33839796 - 33839755
Alignment:
Q  184 atatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| |||||||||||||||  ||||||||||||    
T  33839796 atatatcaagaatgattttatcaagaaagattcaagaatgac 33839755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 47402663 - 47402630
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatc 205  Q
    ||||||||||| ||||||||||||||||||||||    
T  47402663 aagagcaatgctatatatcaagaaagattttatc 47402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 16045867 - 16045812
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16045867 taaagagtaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 16045812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 40214988 - 40215039
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40214988 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgac 40215039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 18404439 - 18404493
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  18404439 aaagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 18404493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 19015402 - 19015454
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  19015402 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 19015454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 9910358 - 9910307
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  9910358 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 9910307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 44094698 - 44094749
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  44094698 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgac 44094749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 36966773 - 36966723
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  36966773 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 36966723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 37821899 - 37821849
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  37821899 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 37821849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 25463674 - 25463727
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  25463674 aagagcaatgctatatatcaagaaagattttatgaagaaaattttaagaatgac 25463727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 25973412 - 25973465
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||    
T  25973412 aagagcaatgttatatatcaagaaagattttatcatgaaaatttcaagaatgac 25973465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 3559612 - 3559668
Alignment:
Q  169 ttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  3559612 ttaaagaacaatgctatatatcaagaaagattttatcaaaaaaattttaagaatgac 3559668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 40273693 - 40273753
Alignment:
Q  165 taatttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||| ||||||||||||| | ||||||||||||||||| ||||||||| ||||||||||||    
T  40273693 taatctaaagagcaatgctagatatcaagaaagattttttcaagaaaaattcaagaatgac 40273753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 32000332 - 32000281
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||    
T  32000332 gagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgac 32000281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 41876508 - 41876456
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||| |||| ||||||| |||||||||    
T  41876508 agagcaatgctatatatcaagaaagattttttcaaaaaaattttaagaatgac 41876456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 6883487 - 6883538
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| |||||| |||||||||||| | ||||||||||||||||||||    
T  6883487 gagcaatgctatatattaagaaagatttttttaagaaaatttcaagaatgac 6883538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 34519757 - 34519795
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaa 211  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  34519757 agagcaatgctatatatcaagaaagattttattaagaaa 34519795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 51620979 - 51621017
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaa 211  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  51620979 agagcaatgctatatatcaagaaagattttattaagaaa 51621017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 41008 - 41062
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  41008 aaagagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgac 41062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 9293644 - 9293590
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  9293644 aaagagcaatgctatatatcaagaaagattttatcaagaaattttcaagaatgac 9293590  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 13354842 - 13354896
Alignment:
Q  170 taaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  13354842 taaagagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaatga 13354896  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 21936081 - 21936131
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatga 224  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21936081 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 21936131  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 23268129 - 23268076
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  23268129 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 23268076  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 35160751 - 35160808
Alignment:
Q  168 tttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  35160751 tttatagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 35160808  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 7475574 - 7475522
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  7475574 agagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgac 7475522  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 10661888 - 10661938
Alignment:
Q  175 agcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  10661888 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgac 10661938  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 33380207 - 33380258
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  33380207 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 33380258  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 31174902 - 31174848
Alignment:
Q  171 aaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||| |||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  31174902 aaagaacaatgttatatatcaagaaagattttattaagaaaatttcaagaatgac 31174848  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 43330910 - 43330963
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||||| ||||||||||||||||||| |||| |||| ||||||||||||    
T  43330910 aagagcaatgctatatatcaagaaagattttctcaaaaaaaattcaagaatgac 43330963  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 14941432 - 14941380
Alignment:
Q  173 agagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||| ||||||||||||||||||||| ||||||  ||||||||||||    
T  14941432 agagcaatgctatatatcaagaaagattttattaagaaagattcaagaatgac 14941380  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 21393751 - 21393702
Alignment:
Q  176 gcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||| ||||||||||||| ||||| ||||||||| || |||||||||    
T  21393751 gcaatgctatatatcaagaaaaattttctcaagaaaaatttaagaatgac 21393702  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 27847630 - 27847683
Alignment:
Q  172 aagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||  ||||| |||||||||||||| ||||||  ||||||||||||    
T  27847630 aagagcaatgctgtatataaagaaagattttattaagaaagattcaagaatgac 27847683  T

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Target: scaffold0204 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 4391 - 4447
Alignment:
Q  169 ttaaagagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  4391 ttaaagagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgac 4447  T

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Target: scaffold0085 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 47850 - 47901
Alignment:
Q  174 gagcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  47850 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaagaatgac 47901  T

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Target: scaffold0228 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 8413 - 8453
Alignment:
Q  185 tatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8413 tatatcaagaaagattttatcaagaaaatttcaagaatgac 8453  T

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Target: scaffold0228; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 15995 - 16035
Alignment:
Q  185 tatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15995 tatatcaagaaagattttatcaagaaaatttcaagaatgac 16035  T

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Target: scaffold0228; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 25947 - 25987
Alignment:
Q  185 tatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25947 tatatcaagaaagattttatcaagaaaatttcaagaatgac 25987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 3069 - 3119
Alignment:
Q  175 agcaatgcaatatatcaagaaagattttatcaagaaaatttcaagaatgac 225  Q
    |||||||| |||||||||||||||||||||||| ||||||| |||||||||    
T  3069 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgac 3119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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