View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_low_3 (Length: 621)
Name: NF9649_low_3
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 7 - 605
Target Start/End: Complemental strand, 36562568 - 36561970
Alignment:
| Q |
7 |
ggagaagcaaagggaaatgatggtggaaaatagtaaattggttggagagaagaaggagatggagaagagtattgagaatttgactgaggggagggatact |
106 |
Q |
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| T |
36562568 |
ggagaaggaaagggaaatgatggtggaaaatagtaaattggttggagagaagaaggagatggagaagagtattgagaatttgactgaggggagggatact |
36562469 |
T |
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| Q |
107 |
gcttataggaccctggatatggttaagagagaattagagaataggcagcgtgaggttgatgaggcgagaagagctagagatgaggttgagaaggttaaag |
206 |
Q |
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| T |
36562468 |
gtttataggaccctggatatggttaagagagaattagagaataggcagcgtgaggttgatgaggcgagaagagctagagatgaggttgagaaggttaaag |
36562369 |
T |
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| Q |
207 |
ttggctatgagaatgaagtcgttaagttgcaaggtgaaataagtgtactaaacggtgttgtggaggagtggaaaattttcgctagagagtctggagagaa |
306 |
Q |
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| T |
36562368 |
ttggctatgagaatgaagtcgtcaagttgcaaggtgaaataagtgtactaaacggtgctgtggaggagtgggaaattttcgctagagagtctggagagaa |
36562269 |
T |
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| Q |
307 |
aaacaatggattactctctcaggttaatcattataggaatgctattgatgaagtgaagtctatgaatgagctcaacagtaagaagtttgatgaggagaaa |
406 |
Q |
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| T |
36562268 |
aaacaatggattactctctcaggttaatcattataggaatgctattgatgaagtgaagtctatgaatgagctcaacagtaagaagtttgatgaggagaaa |
36562169 |
T |
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| Q |
407 |
aagaaagtggagaatttgctgtcacaagttgtggaaatggaggaaaagattgagctattactctctcaagttcaatgttataagaatgctgttgaagaag |
506 |
Q |
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| T |
36562168 |
aagaaagtggagaatttgcaatcacaagttgtggaaatggaggaaaagattgagctattactctctcaagttcaatgttataagaatgctgttgaagaag |
36562069 |
T |
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| Q |
507 |
tggagcttgagagggataacatcagaaagggatatgatgaagagaaaaacaaagtggaggatttggaggcacgtgttactgaattgaagctcaagcagg |
605 |
Q |
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| T |
36562068 |
tggagcttgagagggataacatcagaaagggatatgatgaagagaaaaacaaagtagaggatttggaggcacgtgttactgaattgaagcttaagcagg |
36561970 |
T |
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