View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9649_low_4 (Length: 561)
Name: NF9649_low_4
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 12 - 545
Target Start/End: Complemental strand, 2483895 - 2483376
Alignment:
| Q |
12 |
agatatgccacttgctgcacatgaagaaactcaataatcaatttgtaatgcctctgaatatttttaacaaactaagaaaaccaaaataacaaattaagaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483895 |
agatatgccacttgctgcacatgaagaaactcaataatcaagttgtaatgcctctgaagatttttaacaaactaagaaaaccaaaataacaaattaagaa |
2483796 |
T |
|
| Q |
112 |
aaccaaatcactatcaatataacgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacggcagaagcgattagtggttcaagcgg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483795 |
aaccaaatcactatcaatataacgaatattcaaaagacaaaccaaaaacaatcccaaacttttggaattcgacggcagaagcgattagtggttcaagcgg |
2483696 |
T |
|
| Q |
212 |
atcgaaccatgctcttcataccatgttaacaatacaaatacgtacagatataaaataaagaaaaatagaataagaacaacctatgttaggatttcataga |
311 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
2483695 |
atcgaaccatgctcttgataccatgttaacaatacaaa----tacagatataaaataaagaaaaatagaataagaac----------agggtttcataga |
2483610 |
T |
|
| Q |
312 |
atatcaatagttaagtccaagactttattatctaaataaaagtgaagagaagacagttttgaggagttatttattgcaaaaaagtttgtccttaaaccat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483609 |
atatcaatagttaagtccaagactttattatctaaataaaagtgaagagaagacagatttgaggagttatttattgcaaaaaagtttgtccttaaaccat |
2483510 |
T |
|
| Q |
412 |
tattttaaagacttatttcatcattttcttgatatgaaccactccttattggtacggtaattggccaggaatgttacctgggggataataattacaaata |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
2483509 |
tattttaaagacttatttcatcattttcttgatatgaaccactccttattggtacggtaattggccaggaatattacctgggggataataattacaagta |
2483410 |
T |
|
| Q |
512 |
acaaatgttccaccattattacatttcactttgc |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
2483409 |
acaaatgttccaccattattacatttcactttgc |
2483376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 413 - 545
Target Start/End: Complemental strand, 2479005 - 2478872
Alignment:
| Q |
413 |
attttaaagacttatttcat-cattttcttgatatgaaccactccttattggtacggtaattggccaggaatgttacctgggggataataattacaaata |
511 |
Q |
| |
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|||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2479005 |
attttatagacttatttcatacattttcttgatctgaaccagaccttattggtacggtaattggccaggaatgttacctgggggataataattacaagta |
2478906 |
T |
|
| Q |
512 |
acaaatgttccaccattattacatttcactttgc |
545 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
2478905 |
acaaatgttccaccattattacatttcactttgc |
2478872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 2479359 - 2479191
Alignment:
| Q |
90 |
aaccaaaataacaaattaagaaaaccaaatcactatcaatata----acgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacg |
185 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
2479359 |
aaccaacataacaaatcaagagaactaaatcactatcaatatatataacgaatattcaaaagacaaaccaaaaacaatcccaagcttttggaattcgacg |
2479260 |
T |
|
| Q |
186 |
gcagaagcgattagtggttc--aagcggatcgaaccatgctcttcataccatgttaacaatacaaatac |
252 |
Q |
| |
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| ||| ||||||||||||| ||| ||||| ||||||||||||||||| |||||||||| ||| |||| |
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|
| T |
2479259 |
gtggaaacgattagtggttcaaaagaggatcaaaccatgctcttcatacaatgttaacaacacatatac |
2479191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 467 - 545
Target Start/End: Complemental strand, 2486635 - 2486557
Alignment:
| Q |
467 |
ggtaattggccaggaatgttacctgggggataataattacaaataacaaatgttccaccattattacatttcactttgc |
545 |
Q |
| |
|
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|
| T |
2486635 |
ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgagccaccattatcacatttcactttgc |
2486557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 1175437 - 1175506
Alignment:
| Q |
163 |
tcccaaacttttggaattcgacggcagaagcgattagtggttcaagcggatcgaaccatgctcttcatac |
232 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||| |||||||||||| |||| |||||| ||||| |||| |
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| T |
1175437 |
tcccaaacttttgggattcgacagcggaagcgactagtggttcaagacgatcaaaccatactcttgatac |
1175506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 3775671 - 3775795
Alignment:
| Q |
94 |
aaaataacaaattaagaaaaccaaatcactatcaatataacgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacggcagaagc |
193 |
Q |
| |
|
|||||||||| || || |||||||||| || ||||||| ||| |||||||| |||| | || |||||||||||||||| ||| |||| ||||||| |
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|
| T |
3775671 |
aaaataacaagttgggagaaccaaatcatgattaatataatcaatcttcaaaaggcaaatcaaacacaatcccaaactttttgaaatcgataacagaagc |
3775770 |
T |
|
| Q |
194 |
gattagtggttcaa-gcggatcgaa |
217 |
Q |
| |
|
|| |||||||||| |||||||||| |
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| T |
3775771 |
gacaagtggttcaaggcggatcgaa |
3775795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 24135127 - 24135082
Alignment:
| Q |
206 |
aagcggatcgaaccatgctcttcataccatgttaacaatacaaata |
251 |
Q |
| |
|
||||||||| ||||| |||||| ||||||| ||||||||||||||| |
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| T |
24135127 |
aagcggatcaaaccacgctcttgataccatcttaacaatacaaata |
24135082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 3950697 - 3950617
Alignment:
| Q |
166 |
caaacttttggaattcgacggcagaagcgattagtggttcaag-cggatcgaaccatgctcttcataccatgttaacaata |
245 |
Q |
| |
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|||||||||| |||||| ||||||| || ||||||||||| |||||| ||||||||| | ||||||||||||||||| |
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| T |
3950697 |
caaacttttgagattcgatagcagaagtgacaagtggttcaaggcggatcaaaccatgctttcgataccatgttaacaata |
3950617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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