View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9649_low_5 (Length: 505)
Name: NF9649_low_5
Description: NF9649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9649_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 121 - 294
Target Start/End: Complemental strand, 43367130 - 43366961
Alignment:
| Q |
121 |
aatagtagagctgggtatatatatgggtcgactcgaggcccacatcaacccgtttaactcgcagtccatgggcttaaaaccaatattttcgactatttct |
220 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43367130 |
aatagtagagctgggtatat----gggtcgactcgaggcccacatcaacccgtttaactcgcagtccatgggcttaaaaccaatattttcgacaatttct |
43367035 |
T |
|
| Q |
221 |
ttacgcatccctcctatttggttttaattatgaaatctgaaaaaacagagtgttagagactgtgttgaaagtaa |
294 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43367034 |
ttacgcatccctcatatttagtttgaattatgaaatctgaaaaaacagagtgttagagactgtgttgaaagtaa |
43366961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 394 - 496
Target Start/End: Complemental strand, 43366867 - 43366765
Alignment:
| Q |
394 |
gtccatttatagtttggcccataactgaatttcatacttatctctaacccttgttttcttctgtttctctcatttcttcacgaacgaatcacttcttctc |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43366867 |
gtccatttatagtttggcccataactgaatttcatacttatctctaacccttgttttgttctgtttctctcatttcttcacgaacgaatcacatcttctc |
43366768 |
T |
|
| Q |
494 |
tgc |
496 |
Q |
| |
|
||| |
|
|
| T |
43366767 |
tgc |
43366765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 43367253 - 43367191
Alignment:
| Q |
41 |
attttacagtgctaaaaaactactgcatccaattactactcatttccaaatcccatcccatgt |
103 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43367253 |
attttacagtgctcaaaaactactgcatccaattactactcatttccaaatcccatcccatgt |
43367191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 43366930 - 43366902
Alignment:
| Q |
334 |
aaaatgatgtagggtggtataagaaatta |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43366930 |
aaaatgatgtagggtggtataagaaatta |
43366902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University