View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_high_1 (Length: 512)
Name: NF9650_high_1
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_high_1 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Original strand, 33242333 - 33242823
Alignment:
| Q |
20 |
aaggtaatctccatggtatttactcagcacgagatggatattattgggtgaacatgattgcttttgctgctagtgcagtggagaatgtttcatggacttg |
119 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
33242333 |
aaggtaatcttcatggtatttactcagcagaggatggatattattggttgaacatgattgcttttgctgctggtgcagtggagaatgtttcatgaacttg |
33242432 |
T |
|
| Q |
120 |
aacatggcaacttccagcaccggaaaaggtaaaattctttttgtggactgctcttcagaactccctgcctacgcattgaatgttaagccatcgtggtgtg |
219 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
33242433 |
gacatggcaacttccagcgttggaaaaggtaaaattctttttgtggactgctcttcagaactccctgcctacgcattggatcttaagtcatcgtggtgtg |
33242532 |
T |
|
| Q |
220 |
cttcaggtgaacctctacccaagatgccatcaggaacctgagactatgcttcacttcttgcgtgattgtgcttttgtgaattgcttttggagatcaattt |
319 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33242533 |
cttcaggtgaacctcttcccaagatgccatcaggaacccgagactatgcttcacttcttgtgtgattgtgcttttgtgaattgcttttggagatcaattt |
33242632 |
T |
|
| Q |
320 |
gattctcgagtaacttg-ttttccagaccgataatttgtatgagtggttgcggactggtgttaaaggttcaac------tatttatatgttcctggaagc |
412 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |
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| T |
33242633 |
gattctcgagtaactcgtttttccagaccgataatttgtatgagtggttgcggactggtgtcaaaggttcaactatttatatttatatgctcctggaagc |
33242732 |
T |
|
| Q |
413 |
tatttggtggctttggtgcgcaagtaataagttatgtatggagaatgaattggtttcacctctctctctaaagatttgtaccgagaattat |
503 |
Q |
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||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
33242733 |
tatttggtgactttggtgtgcaaggaataatttatgtatggagaatgaattggtttcacctgtctctctaaagatttgtattgagaattat |
33242823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Original strand, 33250254 - 33250743
Alignment:
| Q |
20 |
aaggtaatctccatggtatttactcagcacgagatggatattattgggtgaacatgattgcttttgctgctagtgcagtggagaatgtttcatggacttg |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
33250254 |
aaggtaatcttcatggtatttactcagcagaggatggatattattggttgaacatgattgcttttgctgctggtgcagtggagactgtttcatgaacttg |
33250353 |
T |
|
| Q |
120 |
aacatggcaacttccagcaccggaaaaggtaaaattctttttgtggactgctcttcagaactccctgcctacgcattgaatgttaagccatcgtggtgtg |
219 |
Q |
| |
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| |||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |
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| T |
33250354 |
gatatggaaccttccagcgccggaaaaggaaaaattctttttgtggactgctcttcagaactcc-tgcctacgcattggatgttaagccatcatggtgtg |
33250452 |
T |
|
| Q |
220 |
cttcaggtgaacctctacccaagatgccatcaggaacctgagactatgcttcacttcttgcgtgattgtgcttttgtgaattgcttttggagatcaattt |
319 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33250453 |
cttcagttgaacctcttcccaagatgccatcaggaacctgagactatgcttcacttcttgcgtgattgtgcttttgtgaattgctcttggagatcaattt |
33250552 |
T |
|
| Q |
320 |
gattctcgagtaacttg-ttttccagaccgataatttgtatgagtggttgcggactggtgttaaaggttcaa------ctatttatatgttcctggaagc |
412 |
Q |
| |
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||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33250553 |
gattctcgagtaactcgtttttccagaccgataatttgtatgagttgttgcggactggtgttaaaggttcaattatttatatttatatgttcctggaagc |
33250652 |
T |
|
| Q |
413 |
tatttggtggctttggtgcgcaagtaataagttatgtatggagaatgaattggtttcacctctctctctaaagatttgtaccgagaattat |
503 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| |
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| T |
33250653 |
tatttggtggctttggtgcgcaaggaataagttatgtatggagaatgaattggtttcacctgtctctctaaagatttgtactgataattat |
33250743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 503
Target Start/End: Original strand, 44985349 - 44985834
Alignment:
| Q |
20 |
aaggtaatctccatggtatttactcagcacgagatggatattattgggtgaacatgattgcttttgctgctagtgcagtggagaatgtttcatggacttg |
119 |
Q |
| |
|
||||||||||| | | | |||||| |||| | |||||||||| ||| |||||||||||| |||||||||| |||||||||| | |||||| |||||||| |
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| T |
44985349 |
aaggtaatctctaagatgtttacttagcatgggatggatattgttgcctgaacatgattgattttgctgctggtgcagtggaaattgtttcgtggacttg |
44985448 |
T |
|
| Q |
120 |
aacatggcaacttccagcaccggaaaaggtaaaattctttttgtggactgctcttcagaactccctgcctacgcattgaatgttaagccatcgtggtgtg |
219 |
Q |
| |
|
| |||||| |||||||| ||| ||||||||||| ||||||| | |||||| |||| | | ||||| ||| ||||||||||| ||||||||| |
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| T |
44985449 |
gatatggcagcttccagcgccgaaaaaggtaaaaaaaaaaatgtggaccgttcttcataacttcttacctacctgttggatgttaagccaccgtggtgtg |
44985548 |
T |
|
| Q |
220 |
cttcaggtgaacctctacccaagatgccatcaggaacctgagactatgcttcacttcttgcgtgattgtgcttttgtgaattgcttttggagatcaattt |
319 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||||| |||||| |||||||| |||| |||||| ||||| ||||||| |||||| ||||||||| |
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| T |
44985549 |
cttcaggtgaacctctgcctaagatgccatcagaaacctcagactacgcttcactgcttgtgtgattatgcttctgtgaatcacttttgcagatcaattg |
44985648 |
T |
|
| Q |
320 |
gattctcgagtaacttgtttt-ccagaccgataatttgtatgagtggttgcggact-ggtgttaaaggttcaactatttatatgttcctggaagctattt |
417 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||||||||| | |||||||||||||| || |||||||||||||||||||||||| |||||| |||| ||| |
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|
| T |
44985649 |
gattctcgggtaactcatttttccagaccgataatttgtgttagtggttgcggactcggggttaaaggttcaactatttatatgctcctggtagctgttt |
44985748 |
T |
|
| Q |
418 |
ggtggctttggtgcgcaagtaataagttatgtatggagaatgaattggtttcacctctctctctaaagatttgtaccgagaattat |
503 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||| |||||||||| | ||||||| ||||| ||||| ||||||||| |
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|
| T |
44985749 |
ggtggctttggtgcgcaaagaataagttgtgtatggagaatgagttggtttcacttgtctctctgaagatctgtacggagaattat |
44985834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 205 - 399
Target Start/End: Complemental strand, 25867272 - 25867078
Alignment:
| Q |
205 |
agccatcgtggtgtgcttcaggtgaacctctacccaagatgccatcaggaacctgagactatgcttcacttcttgcgtgattgtgcttttgtgaattgct |
304 |
Q |
| |
|
|||||||||| |||||| ||| ||||||| | |||||||| ||||| ||||||||||| ||||||| | ||| ||| ||||||||||||||||| | | |
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| T |
25867272 |
agccatcgtg-tgtgctccagctgaacctttgaccaagatgtaatcagaaacctgagactttgcttcattgcttacgttattgtgcttttgtgaatcgtt |
25867174 |
T |
|
| Q |
305 |
tttggagatcaatttgattctcgagtaac-ttgttttccagaccgataatttgtatgagtggttgcggactggtgttaaaggttcaactatttata |
399 |
Q |
| |
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|||||||||||||| |||||||| |||| || ||||||| ||| ||||||||||||| |||||| ||||||||| |||| |||| ||||||||| |
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|
| T |
25867173 |
tttggagatcaattagattctcggataacttttttttccaaaccaataatttgtatgaatggttgtggactggtgctaaatcttcatctatttata |
25867078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 376 - 503
Target Start/End: Complemental strand, 40727 - 40600
Alignment:
| Q |
376 |
gtgttaaaggttcaactatttatatgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaatgaattggtttcacctct |
475 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| | ||| |||||||||||||| |||| || |||||| | ||| ||||||||||||||||||||| | | |
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|
| T |
40727 |
gtgtgaaaggttcatctatttatatgttccttgcggctgtttggtggctttggcgcgctagaaataagctgtgtgtggagaatgaattggtttcacttgt |
40628 |
T |
|
| Q |
476 |
ctctctaaagatttgtaccgagaattat |
503 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |
|
|
| T |
40627 |
ctctctaaagatctgtacggagaattat |
40600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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