View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_high_4 (Length: 338)
Name: NF9650_high_4
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 48133838 - 48133523
Alignment:
| Q |
15 |
taagaaaatgttgaaaccacgtttcagcctttaaacc-----------tgggaaaacgctgtgccaaagaggtactcaatctatttgttggatgatattg |
103 |
Q |
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| T |
48133838 |
taagaaaatgttgaaaccacgtttcagcttttaaaccgccgtttgagatgggaaaacgctatgccaaacaggtactcaatctatttgttggatgatattg |
48133739 |
T |
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| Q |
104 |
agaaatatgtgcttaccatatgagttttgaccaagtatggttcaagtttgtgnnnnnnnnttgtgaaagtaagggtggaaccaccaatatgtatgacgga |
203 |
Q |
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| T |
48133738 |
agaaatatgtgcttaccatatgagttttgaccaagtatggttcaagtttgtgaaaaaaa-ttgtgaaagtaagggtggaaccaccaatatgtatgacgga |
48133640 |
T |
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| Q |
204 |
aaaagattcagcttctatgagctttagtgttttgaatgactatcttttgtgtttctgcaaaagggaagacttataaccatgacttgagcctttctaattg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48133639 |
aaaagattcagcttctatgagctttagtgttttgaatgactatcttttgtgtttctgcaaaagggaagacttataaccatgacttgagcctttctaattg |
48133540 |
T |
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| Q |
304 |
aaagtacatgagcattg |
320 |
Q |
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||||||||||||||||| |
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| T |
48133539 |
aaagtacatgagcattg |
48133523 |
T |
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