View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9650_low_1 (Length: 740)
Name: NF9650_low_1
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 20810145 - 20810626
Alignment:
| Q |
1 |
tggggaatgggtggatcaggcaaaacaaccacgaccaaaggtctctacaatcaaatccatcgtagattccaaggtaggacaagtttcgttgaaagtatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
20810145 |
tggggaatgggtggatcaggcaaaacaaccacggccaaagctctctacaatcaaatccatcgtagattccagggtagaacaagtttcgttgaaagtatta |
20810244 |
T |
|
| Q |
101 |
gagaagtttgtgataataatagtagaggggctattactttacaagaacaacttcttttagatctccttgaaataaagcagaagattcatagtgttgaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| || |
|
|
| T |
20810245 |
gagaagtttgtgataataatagtagaggggctattactttacaaaaacaacttcttttagatctctttgaaataaagcagaagattcatggtgttgcatt |
20810344 |
T |
|
| Q |
201 |
ggggaaaactaaaatcatgacaagacttcagggacaaaaggttttggtcgtactcgatgatgtgaccaagtctgagcaattaaaagctctgtgtgaaaat |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810345 |
ggggaaaaataaaatcatgacaagacttcagggacaaaaggttttggtcgtactcgatgatgtgaccaagtctgagcaattaaaagctctgtgtgaaaat |
20810444 |
T |
|
| Q |
301 |
cctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaagtcatttaaagttgaccatgtctacaccatgactgaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810445 |
cctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaagtcatttaaagttgaccatgtctacaccatgactgaaa |
20810544 |
T |
|
| Q |
401 |
tggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaacgaccaaaccctagagacaaatttagcgaactctc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20810545 |
tggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaacaaccaaaccctagagacaaatttagcgaactctc |
20810626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 20836500 - 20836981
Alignment:
| Q |
1 |
tggggaatgggtggatcaggcaaaacaaccacgaccaaaggtctctacaatcaaatccatcgtagattccaaggtaggacaagtttcgttgaaagtatta |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
20836500 |
tggggaatgggtggattaggcaaaacaaccacggccaaagctctctacaatcaaatccatcgtagattccagggtagaacaagtttccttgaaagtatta |
20836599 |
T |
|
| Q |
101 |
gagaagtttgtgataataatagtagaggggctattactttacaagaacaacttcttttagatctccttgaaataaagcagaagattcatagtgttgaatg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| || |
|
|
| T |
20836600 |
gagaagtttgtgataataatagtggaggggttattactttacaagaacaacttcttttagatctccttgaaataaaacagaagattcacagtattgcatt |
20836699 |
T |
|
| Q |
201 |
ggggaaaactaaaatcatgacaagacttcagggacaaaaggttttggtcgtactcgatgatgtgaccaagtctgagcaattaaaagctctgtgtgaaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
20836700 |
ggggaaaactaaaatcatgacaagactccagcgacaaaaggttttggtcgtactcgatgatgtgaccaagtctgagcaattaaaagcactgtgtgcaaat |
20836799 |
T |
|
| Q |
301 |
cctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaagtcatttaaagttgaccatgtctacaccatgactgaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20836800 |
cctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaagtcatttaaagttgaccatgtctacaccatgactgaaa |
20836899 |
T |
|
| Q |
401 |
tggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaacgaccaaaccctagagacaaatttagcgaactctc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20836900 |
tggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaacaaccaaaccctagagacaaatttagcgaactctc |
20836981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 483 - 722
Target Start/End: Original strand, 20839530 - 20839769
Alignment:
| Q |
483 |
aagctaaatgtttccataatgtaaccctttattagnnnnnnnnngttcgagttgttgcatacgtctattcataaagaatcgacaacagtactgctaatgc |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20839530 |
aagctaaatgtttccataatgtaaccctttattagaaaaaaaaagttcgagttgttgcatacgtctattcataaagaatcgacaacagtactgctaatgc |
20839629 |
T |
|
| Q |
583 |
tttgcatagaatgataagatcatagtgcagagagagaatttgtagacagacatgtatctgttacagttttattgtgaaagcttccataatggaaagccga |
682 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20839630 |
tttgcatagaatgataagatcatagtgcagagagagaatttgtagacagacatgtatctgttacagttttattgtgaaagcttccttaatggaaagccga |
20839729 |
T |
|
| Q |
683 |
aaggaactatattgcctggaatacatttttctgtttagaa |
722 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20839730 |
aaggaactgtattgcctggaatacatttttctgtttagaa |
20839769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 583 - 722
Target Start/End: Original strand, 20813191 - 20813330
Alignment:
| Q |
583 |
tttgcatagaatgataagatcatagtgcagagagagaatttgtagacagacatgtatctgttacagttttattgtgaaagcttccataatggaaagccga |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20813191 |
tttgcatagaatgataagatcatagtgcagagagagaatttgtagacagacatgtatctgttacagttttattgtgaaagcttccataatggaaagccga |
20813290 |
T |
|
| Q |
683 |
aaggaactatattgcctggaatacatttttctgtttagaa |
722 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20813291 |
aaggaactgtattgcctggaatacatttttctgtttagaa |
20813330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 586
Target Start/End: Original strand, 20813067 - 20813105
Alignment:
| Q |
548 |
tattcataaagaatcgacaacagtactgctaatgctttg |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20813067 |
tattcataaagaatcgacaacagtactgctaatgctttg |
20813105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 31173889 - 31174352
Alignment:
| Q |
1 |
tggggaatgggtggatcaggcaaaacaaccacgaccaaaggtctctacaatcaaatccatcgtagattccaaggtaggacaagtttcgttgaaagtatta |
100 |
Q |
| |
|
||||||||||||||||| || ||||||||||| |||||| | |||||||| ||||||||||||| || ||||||| ||||||||| ||||||||||| |
|
|
| T |
31173889 |
tggggaatgggtggatccgggaaaacaaccacagccaaagctatctacaataaaatccatcgtaggtttgaaggtagaacaagtttctttgaaagtattc |
31173988 |
T |
|
| Q |
101 |
gagaagtttgtgataataatagtagaggggctattactttacaagaacaacttcttttagatctccttgaaataaagcagaagattcatagtgttgaatg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||| ||||||| || |||||||||| ||| || |
|
|
| T |
31173989 |
gagaagtttgtgataataattctagaggggttattcatttacaacaacaacttcttttagatctcctgcaaataaaacaagagattcatagcattgcatt |
31174088 |
T |
|
| Q |
201 |
ggggaaaactaaaatcatgacaagacttcagggacaaaaggttttggtcgtactcgatgatgtgaccaagtctgagcaattaaaagctctgtgtgaaaat |
300 |
Q |
| |
|
||||| ||||| || || |||||||| |||||||||| ||| ||||||||||||||||||||| | |||||||||||||| ||||||| | || |
|
|
| T |
31174089 |
ggggatgactaagatagagaaaagacttcgaggacaaaaggctttcatcgtactcgatgatgtgaccacacccgagcaattaaaagccctgtgtgcagat |
31174188 |
T |
|
| Q |
301 |
cctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaagtcatttaaagttgaccatgtctacaccatgactgaaa |
400 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||| ||| ||| | |||||| ||| ||| ||||| |||| |
|
|
| T |
31174189 |
cctaagttgttcggttcgggaagtgtattgattattacaactagagatgcacgccttctcaactcacttagtgacgaccatatcttcacaatgacggaaa |
31174288 |
T |
|
| Q |
401 |
tggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaacgaccaaaccctagaga |
464 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||| ||||||||||||| |||||| |||||||| |
|
|
| T |
31174289 |
tggacaaataccagtcccttgaacttttctgttggcatgcttttcaacaaccaaatcctagaga |
31174352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 3400659 - 3400213
Alignment:
| Q |
1 |
tggggaatgggtggatcaggcaaaacaaccacgaccaaaggtctctacaatcaaatccatcgtagattccaaggtaggacaagtttcgttgaaagtatta |
100 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||| | ||||||||||||||| | |||||| | ||||| |||||||| | ||||||||| |
|
|
| T |
3400659 |
tggggaatgggtggatccgggaaaacaaccacggccaaagctatctacaatcaaatccgttctagatttaagggtagagcaagtttcatcgaaagtattc |
3400560 |
T |
|
| Q |
101 |
gagaagtttgtgataataatagtagaggggctattactttacaagaacaacttcttttagatctccttgaaataaagcagaagattcatagtgttgaatg |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| |||||||| |||||||||||||||||||| | ||||||| || |||||||||| ||| | |
|
|
| T |
3400559 |
gagaagtttgtgataataataatagaggggttattcctttacaacaacaacttcttttagatctcttgaaaataaaacaagagattcatagcattgcctc |
3400460 |
T |
|
| Q |
201 |
ggggaaaactaaaatcatgacaagacttcagggacaaaaggttttggtcgtactcgatgatgtgaccaagtctgagcaattaaaagctctgtgtgaaaat |
300 |
Q |
| |
|
|||| |||||| || || |||||||| ||||||| ||||| ||| |||| ||||||||||||| ||||||||||||||| ||||||| | || |
|
|
| T |
3400459 |
agggataactaagattgagaaaagacttcgaggacaaacagtttttgtcatacttgatgatgtgaccacatctgagcaattaaaaaacctgtgtgcagat |
3400360 |
T |
|
| Q |
301 |
cctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaagtcatttaaagttgaccatgtctacaccatgactgaaa |
400 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||| ||| ||| | ||||||| ||| ||| ||||| |||| |
|
|
| T |
3400359 |
cctaagttgttcggttcgggaagtgtattgattattacaactagagatggacgccttctcaaatcacttagtggtgaccatatcttcacaatgacagaaa |
3400260 |
T |
|
| Q |
401 |
tggacaaacaccaatcccttgaacttttcagttgtcatgcttttcaa |
447 |
Q |
| |
|
||||| || |||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
3400259 |
tggacgaagaccagtcccttgaacttttctgttggcatgcttttcaa |
3400213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 583 - 662
Target Start/End: Complemental strand, 3397406 - 3397327
Alignment:
| Q |
583 |
tttgcatagaatgataagatcatagtgcagagagagaatttgtagacagacatgtatctgttacagttttattgtgaaag |
662 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
3397406 |
tttgcatagaatgataagatcatagtgcagagagagaacttgtagacagacatgtatccgttacagttttattgcgaaag |
3397327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 483 - 582
Target Start/End: Complemental strand, 3397596 - 3397496
Alignment:
| Q |
483 |
aagctaaatgtttccataatgtaaccctttattagnnnnnnnnng-ttcgagttgttgcatacgtctattcataaagaatcgacaacagtactgctaatg |
581 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3397596 |
aagcaaaatgtttccataatgtaacccttcattagaaaacaaaagcttcaagttgttgcatacgtctattcataaagaagtgacaacagtactgctaatg |
3397497 |
T |
|
| Q |
582 |
c |
582 |
Q |
| |
|
| |
|
|
| T |
3397496 |
c |
3397496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 583 - 646
Target Start/End: Original strand, 31177163 - 31177226
Alignment:
| Q |
583 |
tttgcatagaatgataagatcatagtgcagagagagaatttgtagacagacatgtatctgttac |
646 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
31177163 |
tttgcagagaatgataagatcataatgcagagagagaacttgtagacaaatatgtatctgttac |
31177226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 8373766 - 8373325
Alignment:
| Q |
1 |
tggggaatgggtggatcaggcaaaacaaccacgaccaaaggtctctacaatcaaatccatcgtagattccaaggtaggacaagtttcgttgaaagtatta |
100 |
Q |
| |
|
||||||||||||||||| || ||||| ||| | |||||| | ||||||||| |||||||||| |||||| |||| ||||||||| ||||||||||| |
|
|
| T |
8373766 |
tggggaatgggtggatccgggaaaactaccttggccaaagctatctacaatcgaatccatcgtgaattccagggtaaaacaagtttcattgaaagtattc |
8373667 |
T |
|
| Q |
101 |
gagaagtttgtgataataatagtagaggggctattactttacaagaacaacttcttttagatctccttgaaataaagcagaagattcatagtgttgaatg |
200 |
Q |
| |
|
|||||||||||||| ||||||| | |||| |||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| ||||| ||| | |
|
|
| T |
8373666 |
gagaagtttgtgattataatagaaaagggattattcatttacaggaacaacttctttcagatctcctaaaaacaaaagataagatacatagcattgcagt |
8373567 |
T |
|
| Q |
201 |
ggggaaaactaaaatcatgacaagacttcagggacaaaaggttttggtcgtactcgatgatgtgaccaagtctgagcaattaaaagctctgtgtgaaaat |
300 |
Q |
| |
|
||||| || ||| ||| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
8373566 |
ggggataaataagatcgagaaaagacttcagggacaaaaggttttaatcgtacttgatgatgtgaccaagtctgagcaattaaaagctctgggtggaaat |
8373467 |
T |
|
| Q |
301 |
cctaagttgttaggttcggggagtgtattgattattaccactagagatttacgccttctcaagtcatttaaagttgaccatgtctacaccatgactgaaa |
400 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||| ||||||||| | ||| |||| | ||| ||| || || |||| ||| |||| ||||| |
|
|
| T |
8373466 |
cctaagttgtttggttcaggaagtgtattgattattacaactagagatcgaagccatctcgattcactta---gtgcccgcgtcttcacaatgattgaaa |
8373370 |
T |
|
| Q |
401 |
tggacaaacaccaatcccttgaacttttcagttgtcatgcttttc |
445 |
Q |
| |
|
|||| ||| || | ||||||||||||||||| || |||||||||| |
|
|
| T |
8373369 |
tggataaaaacgagtcccttgaacttttcagctggcatgcttttc |
8373325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 248 - 443
Target Start/End: Complemental strand, 31060624 - 31060429
Alignment:
| Q |
248 |
tcgtactcgatgatgtgaccaagtctgagcaattaaaagctctgtgtgaaaatcctaagttgttaggttcggggagtgtattgattattaccactagaga |
347 |
Q |
| |
|
||||||| |||||||||||||||| || | |||||||||| ||||||| |||| |||||| || |||||| | | |||||||||| |||| || ||||| |
|
|
| T |
31060624 |
tcgtacttgatgatgtgaccaagtttgggaaattaaaagccctgtgtgtaaattgtaagttctttggttcgcgaactgtattgatttttacaaccagaga |
31060525 |
T |
|
| Q |
348 |
tttacgccttctcaagtcatttaaagttgaccatgtctacaccatgactgaaatggacaaacaccaatcccttgaacttttcagttgtcatgcttt |
443 |
Q |
| |
|
| || ||||||||| ||| ||| | ||||||||||| ||| ||| ||||||| | || |||| || ||||||||||||||||| |||||||| |
|
|
| T |
31060524 |
tgaacaccttctcaaatcacttagtgctgaccatgtcttcacaatggtagaaatggtcgaaaaccagtcacttgaacttttcagttggcatgcttt |
31060429 |
T |
|
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