View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_low_11 (Length: 336)
Name: NF9650_low_11
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 148 - 317
Target Start/End: Original strand, 31407140 - 31407309
Alignment:
| Q |
148 |
aaactatttgaatatgaaaa-ggtgaaattttttaccattcttggagcaccatcaatctcagcaacctccatgccagttactatcattccaggaacaacc |
246 |
Q |
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| T |
31407140 |
aaactatttgaaaatgaaaaaggtgaaaaattt-accattcttggagcaccatcaatctcagcaacctccatgccagttactatcattccaggaacaacc |
31407238 |
T |
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| Q |
247 |
tccctagtgagcctaacaatagcatcctcggcagtgttcatgtcgagggccttcattccgggcacagtatc |
317 |
Q |
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| T |
31407239 |
tccctagtgagcctaacaatagcatcctcggcagtgttcatgtcgagggccttcattccaggcacggtatc |
31407309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 31407017 - 31407099
Alignment:
| Q |
70 |
ttagtggtattttactatttgaaaattaaacgaccaaagtctagcgcaaatgattggtgtgcaatg--tgtgagtgttgtaaa |
150 |
Q |
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| T |
31407017 |
ttagtggtatttaactatttgaaaattaaacgatcaaagtctagcgcaaatgattagtgcgcaatgtatgtgagtgttgtaaa |
31407099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31406981 - 31407019
Alignment:
| Q |
1 |
catatcagtatgacactagccatataaaaatgtctctta |
39 |
Q |
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| T |
31406981 |
catatcagtatgacactagccatatcaaaatgtctctta |
31407019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 47481273 - 47481399
Alignment:
| Q |
179 |
ttaccattcttggagcaccatcaatctcagcaacctccatgccagttactatcattccaggaacaacctccctagtgagcctaacaatagcatcctcggc |
278 |
Q |
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| T |
47481273 |
ttaccattcttggggcaccatcaatttcagcaacttccataccagtaacaatcataccaggaacaacttcccttgtaagacgaacaatagcatcttcagc |
47481372 |
T |
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| Q |
279 |
agtgttcatgtcgagggccttcattcc |
305 |
Q |
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||| ||||| || || || |||||||| |
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| T |
47481373 |
agtattcatatcaagtgctttcattcc |
47481399 |
T |
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