View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_low_13 (Length: 318)
Name: NF9650_low_13
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 52950243 - 52950498
Alignment:
| Q |
1 |
aaatggtgcatataattacatgtgtcacttagctcatgaaaataaaaattatatatatgcaccacatagtacttaagaattatattcaccaagcaa-gta |
99 |
Q |
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| T |
52950243 |
aaatggtgcatataattacatgtgtcacttagctcatgaaaataaaaattatatatatgcaccacatagtacttaagaattatattcaccaagcaaagta |
52950342 |
T |
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| Q |
100 |
gcactttgagttatattttcttattttccaagatcataaaagagaaaacaaagatgaatcaatcccaaaatccaagccatcaagccggccaagctgcggg |
199 |
Q |
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| T |
52950343 |
gcactttgagttatattttcttattttccaagatcataaaagagaaaacaaagatgaatcaatcccagaatccaagccatcaagccggccaagctgcggg |
52950442 |
T |
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| Q |
200 |
acaagctcaggtgagcttttagtcccagcatgcattggatatattcatatatatat |
255 |
Q |
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| T |
52950443 |
acaagctcagatgagtttttagtcccatcatgcattggatatatatatatatatat |
52950498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 52950513 - 52950568
Alignment:
| Q |
246 |
atatatatatcaatgcccttttagatgtatattttaaattattgaagcatgatagt |
301 |
Q |
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| T |
52950513 |
atatatatatatatgcccttttagatgtatattttaaattattgaagcatgatagt |
52950568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 6454002 - 6453800
Alignment:
| Q |
12 |
ataattacatgtgtcacttagctcatgaaaataaaaat-tatatatatgcaccacatagtacttaagaattatattcaccaagcaa-gtagcactt--tg |
107 |
Q |
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| T |
6454002 |
ataattacatgtgtcacataactcataaatttgaaaagctatatatatgcacatcattattattatgaattatattcaccaagcaaagtagcacttgctg |
6453903 |
T |
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| Q |
108 |
agttatattttcttattttccaagatcataaaagagaaaacaaagatgaatcaatcccaaaatccaagccatcaagccggccaagctgcgggacaagctc |
207 |
Q |
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| T |
6453902 |
agttaaattat--tatttttcaaaatc-taaaagagaaaacaaagatgaatcaatcccagaatgcaagccaacaaactggccaagccgttggacaagctc |
6453806 |
T |
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| Q |
208 |
aggtga |
213 |
Q |
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|||||| |
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| T |
6453805 |
aggtga |
6453800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 6464613 - 6464532
Alignment:
| Q |
138 |
aaagagaaaacaaagatgaatcaatcccaaaatccaagccatcaagccggccaagctgcgggacaagctcaggtgagctttt |
219 |
Q |
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| T |
6464613 |
aaagagaaaccaaagatgaatcaatcccagaatgcaagccaacaaactggccaagcagtgggacaagctcaggtgagttttt |
6464532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 44942917 - 44942831
Alignment:
| Q |
138 |
aaagagaaaacaaagatgaatcaatcccaaaatccaagccatcaagccggccaagctgcgggacaagctcaggtgagcttttagtcc |
224 |
Q |
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||||||||| |||||||| ||||||| || ||| |||| ||||||| | |||||| | ||||||||||||||||| ||||||||| |
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| T |
44942917 |
aaagagaaatcaaagatggatcaatcacagaatataagcaatcaagctgaccaagccgttggacaagctcaggtgagtttttagtcc |
44942831 |
T |
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