View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9650_low_14 (Length: 311)
Name: NF9650_low_14
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 31287189 - 31287485
Alignment:
| Q |
1 |
tgccgattgaacgctgcatattttcccaaagaccatgttgaacgatttcaagttatttttcatcgactttgctacctcattaggctgcattggtacattg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31287189 |
tgccgattgaacgctgcatatttccccaaagaccatgttgaacgatttcaagttatttttcatcgactttgcaacctcattaggctgcattggtacattg |
31287288 |
T |
|
| Q |
101 |
ttgtccagtttcaaaaagtccagcgccttattccatgagcttctttgatagctctcatgatgttgccgtacttttgttgtgtgtttttggatcagaacac |
200 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
31287289 |
ttgtccagtttcaaaaagtccaacaccttattccatgagcttcttcgatagctctcatgatgttgccgtacttttgtcgtgtgcttttggatcataacac |
31287388 |
T |
|
| Q |
201 |
atcccaaaattgtttccggttcactatttttggtcgtttgaacaatgtagaggcaattattcatcaagaaaacatagcaaaaagcaaggtcatagtg |
297 |
Q |
| |
|
||| ||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||| |||| | |||||||||| |
|
|
| T |
31287389 |
ctcctaaaatggtttccagttcactatttttcgtcgtttgaacaatgtagagacaattattcatcaagaaaagatggcacaaagtagggtcatagtg |
31287485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 31277766 - 31278035
Alignment:
| Q |
7 |
ttgaacgctgcatattttcccaaagaccatgttgaacgatttcaagttatttttcatcgactttgctacctcattaggctgcattggtacattgttgtcc |
106 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||| ||||| || || |||||||| || ||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
31277766 |
ttgaaccctgcatatttccccaaagagtatgttgaatgattttaacttctttttcattgaatttgctacctcattagggtgcattgaatcattgttgtcc |
31277865 |
T |
|
| Q |
107 |
agtttcaaaaagtccagcgccttattccatgagcttctttgatagctctcatgatgttgccgtacttttgttgtgtgtttttggatcagaacacatccca |
206 |
Q |
| |
|
| |||||| | |||| | | ||| |||||||| || ||| |||| ||| |||||| ||||| ||||||||| || ||||||||||| |||| || | |
|
|
| T |
31277866 |
aacttcaaacaatccaacactttactccatgagtttttttcatagttcttatgatgctgccgaacttttgttacgtatttttggatcacaacatcaccta |
31277965 |
T |
|
| Q |
207 |
aaattgtttccggttcactatttttggtcgtttgaacaatgtagaggcaattattcatcaagaaaacata |
276 |
Q |
| |
|
|||| ||| || |||||||| |||||| ||||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
31277966 |
aaatggttcccaattcactatctttggttttttgaaccatgtacctgcagttattcatcaagaaaacata |
31278035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 31276023 - 31275969
Alignment:
| Q |
237 |
tttgaacaatgtagaggcaattattcatcaagaaaacatagcaaaaagcaaggtc |
291 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
31276023 |
tttgaacaatgtacctgcaattgttcatcaagaaaacatagcacaaagcagggtc |
31275969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University