View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_low_15 (Length: 303)
Name: NF9650_low_15
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 35979203 - 35979467
Alignment:
| Q |
18 |
tgtcagactttcgagaagcccagatcagctcttaataataggcatatggcagctaaaaggaaaaactcagacctaacatttttaaagtaggccggactta |
117 |
Q |
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| T |
35979203 |
tgtcagactttcgagaagcccagatcagctcttaataataggcatatgacagctaaaaggaaaaactcagacctaacatttttaaagtaggccggactta |
35979302 |
T |
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| Q |
118 |
ggcattacaaaacctaacttagactagcatattctcaccccaaataatgacttgattcagcagtaataatataatagtatatcaactttgtttgcatgtg |
217 |
Q |
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| T |
35979303 |
ggcgttacaaaacctaacttagactagcatattctcaccccaaataatgacttgattcatcagtaataatataatagtatatcaactttgtttgcatgtg |
35979402 |
T |
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| Q |
218 |
tcaaacttattcaagtttatttacatgtttatgtttttcctgcatg-aaaaaatttaaatttgaatttcgatctgtg |
293 |
Q |
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| T |
35979403 |
tcaaacttattcaa------------gtttatgtttttcctgcatgaaaaaaatttaaaattgaatttcgatctgtg |
35979467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 35969138 - 35969296
Alignment:
| Q |
84 |
tcagacctaacatttttaaagtaggccggacttaggcattacaaaacctaacttagactagcatattctcacccca-aataatgacttgattcagcagta |
182 |
Q |
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| T |
35969138 |
tcagacctatcatctttaaagtaggccggactcaggccttgcaatacctagcttagactaacatattatcaccccctaacaatgtcctggttcatcatta |
35969237 |
T |
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| Q |
183 |
ata-----atataatagtatatcaactttgtttgcatgtgtcaaacttattcaagttta |
236 |
Q |
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| T |
35969238 |
atagactaaagtaatagtatatcaactttgtttgcatgtgtcaaacttattcaagttta |
35969296 |
T |
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