View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_low_17 (Length: 298)
Name: NF9650_low_17
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 28 - 286
Target Start/End: Complemental strand, 4303922 - 4303664
Alignment:
| Q |
28 |
aatctttggcccaaaatttccctcatccaaatcatttatgctaacaacgcgttaatttctaaagcttgaacttggattatcatatcaacaggaaattgtt |
127 |
Q |
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| T |
4303922 |
aatctttggcccaaaatttccctcatccaaatgatttatgctaacaacgcgttaatttctaaagcttgaacttggattatcatatcaacaggaaattgtt |
4303823 |
T |
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| Q |
128 |
ccgctgttcctcatgtaaatgccacttgcccaatttcattcatttcctataatttttactgcttaattcaatcattacatgttttttcgctagctaattc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4303822 |
ccgctgttcctcatgtaaatgccacttgcccaatttcattcatttcctataatttttactgcttaattcaatcattacatgttttttcgctagctaattc |
4303723 |
T |
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| Q |
228 |
caatttccaaagcacatttttatagtcttgcacacatccgacacttgctggtctctgct |
286 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4303722 |
caatttccgaagcacatttttatagtcttgcacacatccgacacttgctggtctctgct |
4303664 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 27538444 - 27538396
Alignment:
| Q |
216 |
gctagctaattccaatttccaaagcacatttttatagtcttgcacacat |
264 |
Q |
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| T |
27538444 |
gctagctaattccaatttctgaagcacatttatacagtcttccacacat |
27538396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 41936222 - 41936258
Alignment:
| Q |
174 |
ctataatttttactgcttaattcaatcattacatgtt |
210 |
Q |
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|||||||||||||||||||| ||| |||||||||||| |
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| T |
41936222 |
ctataatttttactgcttaactcagtcattacatgtt |
41936258 |
T |
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