View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_low_19 (Length: 294)
Name: NF9650_low_19
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 39810239 - 39809974
Alignment:
| Q |
15 |
caccagtatcagaatctctaccaagctccatgttttctcctcgtaccaatccatgcaaactgtataaaagccaaggccatgatcattgatcaaacattgc |
114 |
Q |
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| T |
39810239 |
caccagtatcagaatctctaccaagctccatgttttctcctcgtaccaatccatgcaaactgtataaaagccaaggccatgatca-------aacattgc |
39810147 |
T |
|
| Q |
115 |
atttacatacatatgatcatagctttcacaatagtaatattaggaaagatatcaattaataataa---ggtatgtttagattaacttatttgagctagct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
39810146 |
atttacatacatatgatcatagctttcacaatagtaatattaggaaagatatcaattaataataataaggtatgaatagattaacttatttgagctagct |
39810047 |
T |
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| Q |
212 |
agcttatctactaacataaacactcgcgaaactctttgaaggagtttatgaaagcagacctataacatgttca |
284 |
Q |
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| T |
39810046 |
agcttatctactaacataaacactcgcgaaactctttgaaggagtttatgaaagcagacctataacatgttca |
39809974 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 15797615 - 15797561
Alignment:
| Q |
23 |
tcagaatctctaccaagctccatgttttctcctcgtaccaatccatgcaaactgt |
77 |
Q |
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| T |
15797615 |
tcagaatctcgaccaagctccatgttttctcccctaaccaatccatgcaaactgt |
15797561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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