View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_low_22 (Length: 250)
Name: NF9650_low_22
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 41931026 - 41931269
Alignment:
| Q |
1 |
aatatagcagtatgtaactaaagcttcgcatgtaacattctcaaataaattcagcgcattgcttcaacaacaaaatccagtagcttcagcaagaaaatcc |
100 |
Q |
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| T |
41931026 |
aatatagcagtatgtaactaaagcttcacatgtaacattctcaaataaattcagcgcattgcttcaacaacaaaatccagtagcttcagcaagaaaatcc |
41931125 |
T |
|
| Q |
101 |
aac---aagacaacttcatattaatatcaaattatcctaagaaatgtaacatctaaaagtataccataaaatatctgttgatacaaacctgaaaatagaa |
197 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41931126 |
aacaacaagacaacttcatattaatatcaaattatcctaagaaatgtaacatctgaaagtataccataaaatatctgttgatacaaacctgaaaatagaa |
41931225 |
T |
|
| Q |
198 |
gtgggttgcttaaacgaaaatccatgagttatgtttggtctctg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41931226 |
gtgggttgcttaaacgaaaatccatgagttatgtttggtttctg |
41931269 |
T |
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