View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9650_low_24 (Length: 249)
Name: NF9650_low_24
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_24 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0271 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 41418324 - 41418561
Alignment:
| Q |
12 |
ggtgggtttgataggattacaaagaggtgtagtgagtttgcaaaagctacatcctgtgacttttacaaaacaacggtggcttaccgtgatttgcgtgttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41418324 |
ggtgggtttgataggattacaaagaggtgtagtgagtttgcaaaagctacattctgtgacttttacaaaacaacggtggcttaccgtgatttgcgtgttt |
41418423 |
T |
|
| Q |
112 |
ctcttgtattcaccttgatacttgtgtgtttatgttgtattcaccttgatatcaagaatacactaaactatcatattcaagcatcactttaaacaacaca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41418424 |
ctcttgtattcaccttgatacttgtgtgtttatgttgtattcaccttgatatcaagaatacactaaactatcgtattcaagcatcactttaaacaacaca |
41418523 |
T |
|
| Q |
212 |
ttgtcgtttgactaaatacactacagagcaattaaaat |
249 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41418524 |
ttgtcgtttgactaaatacactatggagcaattaaaat |
41418561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 6114 - 6235
Alignment:
| Q |
11 |
tggtgggtttgataggattacaaagaggtgtagtgagtttgcaaaagctacatcctgtgacttttacaaaacaacggtggcttaccgtgatttgcgtgtt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| ||||||||| |||| |||||||| ||||||||||||| |
|
|
| T |
6114 |
tggtgggtttgataggattacaaagaggtatagtgagtttgcaaaagctatattttgtgacctttacaaaataacgatggcttactatgatttgcgtgtt |
6213 |
T |
|
| Q |
111 |
tctcttgtattcaccttgatac |
132 |
Q |
| |
|
| | |||||||||||||||||| |
|
|
| T |
6214 |
tatgttgtattcaccttgatac |
6235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 6209 - 6320
Alignment:
| Q |
137 |
gtgtttatgttgtattcaccttgatatcaagaatacactaaactatcatattcaagcatcactttaaacaacacattgtcgtttgactaaatacactaca |
236 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||| |||||||||||||||| |||| ||||| ||||||| |
|
|
| T |
6209 |
gtgtttatgttgtattcaccttgataccaaaaatatgctaaactatcatattcagtcatcac-ttaaacaacacattgttgtttaactaagtacactatg |
6307 |
T |
|
| Q |
237 |
gagcaattaaaat |
249 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6308 |
gagcaattaaaat |
6320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 3177 - 3056
Alignment:
| Q |
11 |
tggtgggtttgataggattacaaagaggtgtagtgagtttgcaaaagctacatcctgtgacttttacaaaacaacggtggcttaccgtgatttgcgtgtt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| ||||||||| |||| |||||||| ||||||||||||| |
|
|
| T |
3177 |
tggtgggtttgataggattacaaagaggtatagtgagtttgcaaaagctatattttgtgacctttacaaaataacgatggcttactatgatttgcgtgtt |
3078 |
T |
|
| Q |
111 |
tctcttgtattcaccttgatac |
132 |
Q |
| |
|
| | |||||||||||||||||| |
|
|
| T |
3077 |
tatgttgtattcaccttgatac |
3056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 3082 - 2971
Alignment:
| Q |
137 |
gtgtttatgttgtattcaccttgatatcaagaatacactaaactatcatattcaagcatcactttaaacaacacattgtcgtttgactaaatacactaca |
236 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |||||| |||||||||||||||| |||| ||||| ||||||| |
|
|
| T |
3082 |
gtgtttatgttgtattcaccttgataccaaaaatatgctaaactatcatattcagtcatcac-ttaaacaacacattgttgtttaactaagtacactatg |
2984 |
T |
|
| Q |
237 |
gagcaattaaaat |
249 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2983 |
gagcaattaaaat |
2971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University