View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_low_25 (Length: 248)
Name: NF9650_low_25
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_25 |
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| [»] scaffold0274 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41418564 - 41418786
Alignment:
| Q |
1 |
atcattgtattggtaaatcttccgcctttgcatctttgtaccaaaacccttccaagaacatcttacctctctttcatttttgtaccacatgccggggact |
100 |
Q |
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| T |
41418564 |
atcattgtattggtaaatcttccgcctttgcatctttgtaccaaaacccttccaagaacatcttacctctctttcatttttgtaccacatgccggggact |
41418663 |
T |
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| Q |
101 |
tgctatgaattgacaccaaaatccattttatggtttttcagttttgttaagaatcacagtttcaacttacctttaccgaaaaactacactttgttagagt |
200 |
Q |
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| T |
41418664 |
tgctatgaattgacaccaaaatccattttatggttttttagttttgttaagaatcacagtttcaacttacctttaccgaaaaactgcactttgttagagt |
41418763 |
T |
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| Q |
201 |
gattgaatgcgcggtggcggtag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41418764 |
gattgaatgcgcggtggcggtag |
41418786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6323 - 6538
Alignment:
| Q |
1 |
atcattgtattggtaaatcttccgcctttgcatctttgtaccaaaacccttccaagaacatcttacctctctttcatttttgtaccacatgccggggact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| | ||||||||||||||||||||||| || |||| |
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| T |
6323 |
atcattgtattggtaaatcttccgcctttgcatctttgtacccaaatcc-------aacatcttacttttctttcatttttgtaccacatgctggcgact |
6415 |
T |
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| Q |
101 |
tgctatgaattgacaccaaaatccattttatggtttttcagttttgttaagaatcacagtttcaacttacctttaccgaaaaactacactttgttagagt |
200 |
Q |
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| T |
6416 |
tgctatgaatcgacaccaaaatccatttttggatttctcagttttgttaagaatcatagtttcaacttacctttaccgaaaaactacactttgttagagt |
6515 |
T |
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| Q |
201 |
gattgaatgcgcggtggcggtag |
223 |
Q |
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| T |
6516 |
gattgaatgcgcggtggcggtag |
6538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2968 - 2753
Alignment:
| Q |
1 |
atcattgtattggtaaatcttccgcctttgcatctttgtaccaaaacccttccaagaacatcttacctctctttcatttttgtaccacatgccggggact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| | ||||||||||||||||||||||| || |||| |
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| T |
2968 |
atcattgtattggtaaatcttccgcctttgcatctttgtacccaaatcc-------aacatcttacttttctttcatttttgtaccacatgctggcgact |
2876 |
T |
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| Q |
101 |
tgctatgaattgacaccaaaatccattttatggtttttcagttttgttaagaatcacagtttcaacttacctttaccgaaaaactacactttgttagagt |
200 |
Q |
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|||||||||| |||||||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875 |
tgctatgaatcgacaccaaaatccatttttggatttctcagttttgttaagaatcatagtttcaacttacctttaccgaaaaactacactttgttagagt |
2776 |
T |
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| Q |
201 |
gattgaatgcgcggtggcggtag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2775 |
gattgaatgcgcggtggcggtag |
2753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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