View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9650_low_28 (Length: 244)

Name: NF9650_low_28
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9650_low_28
NF9650_low_28
[»] chr1 (6 HSPs)
chr1 (112-189)||(22771155-22771232)
chr1 (112-189)||(23076947-23077024)
chr1 (19-63)||(22771038-22771082)
chr1 (19-63)||(23076830-23076874)
chr1 (79-110)||(22771093-22771124)
chr1 (79-110)||(23076885-23076916)
[»] chr4 (3 HSPs)
chr4 (112-189)||(36908170-36908245)
chr4 (19-60)||(36908051-36908092)
chr4 (79-110)||(36908108-36908139)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 22771155 - 22771232
Alignment:
Q  112 tctaacataaattaacatttttaattaattacacaaaattacctaaaacccctcttctaaattaaagtttcacatttg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  22771155 tctaacataaattaacatttttaattaattacacaaaattacctaaaaccccttatctaaattaaagtttcacatttg 22771232  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 23076947 - 23077024
Alignment:
Q  112 tctaacataaattaacatttttaattaattacacaaaattacctaaaacccctcttctaaattaaagtttcacatttg 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  23076947 tctaacataaattaacatttttaattaattacacaaaattacctaaaaccccttatctaaattaaagtttcacatttg 23077024  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 22771038 - 22771082
Alignment:
Q  19 ttcatcccccgttttccaagcaaacaccatttcatctgaatgaga 63  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  22771038 ttcatcccccattttccaagcaaacaccatttcatctgaatgaga 22771082  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 23076830 - 23076874
Alignment:
Q  19 ttcatcccccgttttccaagcaaacaccatttcatctgaatgaga 63  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  23076830 ttcatcccccattttccaagcaaacaccatttcatctgaatgaga 23076874  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 22771093 - 22771124
Alignment:
Q  79 actgattttgttgttgttccaataaccctttt 110  Q
    ||||||||||||||||||||||||||||||||    
T  22771093 actgattttgttgttgttccaataaccctttt 22771124  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 23076885 - 23076916
Alignment:
Q  79 actgattttgttgttgttccaataaccctttt 110  Q
    ||||||||||||||||||||||||||||||||    
T  23076885 actgattttgttgttgttccaataaccctttt 23076916  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 36908170 - 36908245
Alignment:
Q  112 tctaacataaattaacatttttaattaattacacaaaattacctaaaacccctcttctaaattaaagtttcacatttg 189  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||    
T  36908170 tctaatataaattaacatttttaattaattacacaaaattacctaaa--cccttttctaaattaaagtttcacatttg 36908245  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 36908051 - 36908092
Alignment:
Q  19 ttcatcccccgttttccaagcaaacaccatttcatctgaatg 60  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  36908051 ttcatcccccattttccaagcaaacaccatttcatctgaatg 36908092  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 36908108 - 36908139
Alignment:
Q  79 actgattttgttgttgttccaataaccctttt 110  Q
    ||||||||||||||||||||||||||||||||    
T  36908108 actgattttgttgttgttccaataaccctttt 36908139  T

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