View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9650_low_30 (Length: 240)
Name: NF9650_low_30
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 27494505 - 27494378
Alignment:
| Q |
38 |
ctcaacaaacgacaacatgtggcgattcaaagggatctcccacagaatctaccagaccaaagatgtttcatcatcctttcttgcaatgggacacacttta |
137 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27494505 |
ctcaacaaacgacaacatgtggcgattcgaagggatctcccacaaaatctaccagaccaaagatgtttcatcatcctttcttgcaatgggacacacttta |
27494406 |
T |
|
| Q |
138 |
tgggagaagctatatgcaactcatgttt |
165 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
27494405 |
tgggagaagctatatgcaactcatgttt |
27494378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 26809891 - 26809689
Alignment:
| Q |
38 |
ctcaacaaacgacaacatgtggcgattcaaagggatctcccacagaatctaccagaccaaagatgtttcatcatcctttcttgcaatgggacacacttta |
137 |
Q |
| |
|
||||| |||| ||||||| ||||||| | ||| |||||||| | || ||||||||| || |||||||| ||||| || ||||||||||||| |||||| |
|
|
| T |
26809891 |
ctcaagaaacaacaacatatggcgatccgaagatatctcccataaaagttaccagacccaaaatgtttcaacatcccttgttgcaatgggacatacttta |
26809792 |
T |
|
| Q |
138 |
tgggagaagctatatgcaactcatgtttaggtataaatggcatgtccttctctatcctgaacaagtttgaagattttataccaaggtaaacatctatgct |
237 |
Q |
| |
|
|||||||||||||||| ||| | ||| ||||||||| |||||| ||| || |||||||||||||||| || |||||||| |||| ||||| ||||| |
|
|
| T |
26809791 |
tgggagaagctatatgtgacttaggttcgagtataaatgttatgtccctctttaccctgaacaagtttgaaaatcttataccatggtatacatcaatgct |
26809692 |
T |
|
| Q |
238 |
agt |
240 |
Q |
| |
|
||| |
|
|
| T |
26809691 |
agt |
26809689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University