View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9650_low_36 (Length: 220)

Name: NF9650_low_36
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9650_low_36
NF9650_low_36
[»] chr7 (4 HSPs)
chr7 (15-204)||(44779162-44779354)
chr7 (137-182)||(44780571-44780616)
chr7 (165-204)||(30085548-30085587)
chr7 (168-204)||(16813435-16813471)
[»] chr8 (4 HSPs)
chr8 (165-204)||(1087240-1087279)
chr8 (165-204)||(8073571-8073610)
chr8 (165-204)||(35065513-35065552)
chr8 (165-204)||(37438508-37438547)
[»] chr6 (2 HSPs)
chr6 (165-204)||(7466512-7466551)
chr6 (165-204)||(31842458-31842497)
[»] chr4 (8 HSPs)
chr4 (165-204)||(25298462-25298501)
chr4 (163-204)||(2717355-2717396)
chr4 (165-204)||(6841029-6841068)
chr4 (165-204)||(37133461-37133500)
chr4 (165-204)||(44258700-44258739)
chr4 (165-204)||(44801763-44801802)
chr4 (163-204)||(16833466-16833507)
chr4 (167-195)||(22300533-22300561)
[»] chr3 (4 HSPs)
chr3 (167-204)||(52313164-52313201)
chr3 (165-204)||(28540948-28540987)
chr3 (165-204)||(31798076-31798115)
chr3 (152-204)||(40673811-40673863)
[»] chr2 (5 HSPs)
chr2 (167-204)||(10665352-10665389)
chr2 (165-204)||(6334108-6334147)
chr2 (165-204)||(12262736-12262775)
chr2 (165-204)||(41738095-41738134)
chr2 (156-196)||(41432548-41432588)
[»] scaffold0223 (1 HSPs)
scaffold0223 (165-204)||(28351-28390)
[»] chr5 (1 HSPs)
chr5 (165-204)||(6563200-6563239)
[»] chr1 (7 HSPs)
chr1 (165-204)||(2118613-2118652)
chr1 (163-198)||(3775832-3775867)
chr1 (165-204)||(12857612-12857651)
chr1 (165-204)||(28215998-28216037)
chr1 (165-204)||(40305126-40305165)
chr1 (165-204)||(43741122-43741161)
chr1 (165-204)||(45967442-45967481)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 44779162 - 44779354
Alignment:
Q  15 agcagagaataatatggcctaatttaatttacgtagccgaccccgcttaatggaataagactttattggttggttg------gtggttgttgttgctgta 108  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||      ||||||||||||||||||    
T  44779162 agcatagaataatatggcctaatttaatttatgtagccgaccccgcttaatggaataagacttgattggttggttggtggttgtggttgttgttgctgta 44779261  T
Q  109 tttaacccnnnnnnnnnnnnnnncagagaatataacatgaatatcaatatatacatggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||||               |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  44779262 tttaaccc---aaaaaaaaaaaacagagaatataacatgaatatcaatatatacatgattaattaagtaaatagtccttacaaatatttagaattt 44779354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 44780616 - 44780571
Alignment:
Q  137 aatataacatgaatatcaatatatacatggttaattaagtaaatag 182  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  44780616 aatataacatgattatcaatatatacatggttaattaagtaaatag 44780571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 30085587 - 30085548
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  30085587 ggttaattaagtaaatagtccttataaatattcagaattt 30085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 16813435 - 16813471
Alignment:
Q  168 taattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  16813435 taattaaataaatagtccttataaatatttaaaattt 16813471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 1087279 - 1087240
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  1087279 ggttaattaagtaaatagtccttataaatattcagaattt 1087240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 8073571 - 8073610
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  8073571 ggttaattaagtaaatagtccctataaatattcagaattt 8073610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 35065513 - 35065552
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  35065513 ggttaattaagtaaatagtccctataaatattcagaattt 35065552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 37438508 - 37438547
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  37438508 ggttaattatgtaaatggtccttataaatatttagaattt 37438547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 7466551 - 7466512
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  7466551 ggttaattaagtaaatggtccttataaatatttagaattt 7466512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 31842458 - 31842497
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  31842458 ggttaataaagtaaattgtccttataaatatttagaattt 31842497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 25298501 - 25298462
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  25298501 ggttaattaagtaaatggtccttataaatatttagaattt 25298462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 2717396 - 2717355
Alignment:
Q  163 atggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  2717396 atggttaattaagtaaatagtccctataaatatttataattt 2717355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 6841068 - 6841029
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  6841068 ggttaattaagtaaatgttccttataaatatttagaattt 6841029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 37133500 - 37133461
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  37133500 ggttaattaagtaaatggtccctataaatatttagaattt 37133461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 44258700 - 44258739
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  44258700 ggttaattaagtaaatggtccctataaatatttagaattt 44258739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 44801763 - 44801802
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  44801763 ggttaattaagtaaattgtccttataaatattcagaattt 44801802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 16833507 - 16833466
Alignment:
Q  163 atggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||||| ||||||||||||| | |||||||    
T  16833507 atggttaattaagtaaatggtccttataaatagtcagaattt 16833466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 22300561 - 22300533
Alignment:
Q  167 ttaattaagtaaatagtccttataaatat 195  Q
    |||||||||||||||||||||||||||||    
T  22300561 ttaattaagtaaatagtccttataaatat 22300533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 52313164 - 52313201
Alignment:
Q  167 ttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||| |||||||||||||||||||||||    
T  52313164 ttaattaagtaaatggtccttataaatatttagaattt 52313201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 28540948 - 28540987
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  28540948 ggttaattaagtaaatggtccttataaatattcagaattt 28540987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 31798076 - 31798115
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  31798076 ggttaattaagtaaatcgtccttataaatattcagaattt 31798115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 40673811 - 40673863
Alignment:
Q  152 tcaatatatacatggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||| ||||| ||| |||||||||||||| ||| ||||||||||| |||||||    
T  40673811 tcaaaatataaatgattaattaagtaaatggtctttataaatattcagaattt 40673863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 10665352 - 10665389
Alignment:
Q  167 ttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10665352 ttaattaagtaaatggtccttataaatatttagaattt 10665389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 6334108 - 6334147
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  6334108 ggttaattaagtaaatggtccttataaatattcagaattt 6334147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 12262736 - 12262775
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  12262736 ggttaattaagtaaatggtccctataaatatttagaattt 12262775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 41738134 - 41738095
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  41738134 ggttaattaagtaaatggtccttataaatattcagaattt 41738095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 41432548 - 41432588
Alignment:
Q  156 tatatacatggttaattaagtaaatagtccttataaatatt 196  Q
    |||||| | |||||||||||||||| |||||||||||||||    
T  41432548 tatatatagggttaattaagtaaatggtccttataaatatt 41432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 28390 - 28351
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  28390 ggttaattaagtaaatggtccttataaatatttaaaattt 28351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 6563239 - 6563200
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  6563239 ggttaattaagtaaatagtccctatagatatttagaattt 6563200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 2118652 - 2118613
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  2118652 ggttaattaagtaaatggtccatataaatatttagaattt 2118613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 3775867 - 3775832
Alignment:
Q  163 atggttaattaagtaaatagtccttataaatattta 198  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3775867 atggttaattaagtaaatagtccatataaatattta 3775832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 12857612 - 12857651
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  12857612 ggttaattaagtaaatggtccttataaatattcagaattt 12857651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 28216037 - 28215998
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  28216037 ggttaattaagtaaataatccctataaatatttagaattt 28215998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 40305126 - 40305165
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  40305126 ggttaattaagtaaataatctttataaatatttagaattt 40305165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 43741122 - 43741161
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  43741122 ggttaattaagtaaatggtccttataaatattcagaattt 43741161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 45967481 - 45967442
Alignment:
Q  165 ggttaattaagtaaatagtccttataaatatttagaattt 204  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  45967481 ggttaattaagtaaatagtccctataaatattcagaattt 45967442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University