View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_low_37 (Length: 205)
Name: NF9650_low_37
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 26707847 - 26707994
Alignment:
| Q |
25 |
tattgaaaacgaatatatatttgacattaattgtttgcacacaatcaatggagtagatggaagagagataataatgcaaatattgttttatttgaaattg |
124 |
Q |
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| T |
26707847 |
tattgaaaacgaatatatatttgacattgattgtttgcacacaatcaattgagtagatggaagagagataataatgcaaatattgttttatttgaaattg |
26707946 |
T |
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| Q |
125 |
gnnnnnnnaaagatactattataatctatatttgaattaaaagtgaat |
172 |
Q |
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| T |
26707947 |
gtttttttaacgatactattataatctatatttgaattaaaagtgaat |
26707994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 26706299 - 26706205
Alignment:
| Q |
27 |
ttgaaaacgaatatatatttgacattaattgtttgcacacaatcaatggagtagatggaagagagataataatgcaaatattgttttatttgaaa |
121 |
Q |
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| T |
26706299 |
ttgaaaatgaatatattttttacattgattatttgcacacaatcaatgagttagacggaagagaggtaagaatggaaatattcttttatttgaaa |
26706205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 18443787 - 18443714
Alignment:
| Q |
38 |
tatatatttgacattaattgtttgcacacaatcaatggagtagatggaagagagataataatgcaaatattgtt |
111 |
Q |
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| T |
18443787 |
tatatattcgatattgattgtttgcacacaatcaatagtgtagatggaagagaggtaagaatgcaaattttgtt |
18443714 |
T |
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