View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9650_low_4 (Length: 474)
Name: NF9650_low_4
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_4 |
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| [»] scaffold0186 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 95 - 458
Target Start/End: Complemental strand, 2460268 - 2459905
Alignment:
| Q |
95 |
agatgaagaaagagcacctaaccttataaatcattttgtatgaaatatttgttcaactgcttctttcaactaagcatctctctttctctttctaccggcc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460268 |
agatgaagaaagagcacctaaccttataaatcattttgtacgaaatatttgttcaactgcttctttcaactaagcatctctctttctctttctaccggcc |
2460169 |
T |
|
| Q |
195 |
actggaatcaactatattatgtttatgggttgcctattccttaggacaaacagaaaaaacaaggacagggagtagcagtcacaaatatcaattagatcca |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2460168 |
actggaatcaactatattatgtttatgggttgcctattcattaggacaaacagaaaaaacaaggacagggagtagcagtcacaaatatcaattagatcca |
2460069 |
T |
|
| Q |
295 |
aaccattcaatctatatacaatccatagtcaccccttcctttcctagcagatctgtagattgctgccaactgtgcatatacattgaggaagacaaaagac |
394 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2460068 |
aaccattcaatctatatacaatccatagtcactccttcctttcctagcagatctgtagattgctgccaactgtgcatatacattgaggaagataaaagac |
2459969 |
T |
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| Q |
395 |
cagtttaaaatacgagaatcactgtctgatatatctacaatagaactgtaaaataacaagttag |
458 |
Q |
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| T |
2459968 |
cagtttaaaatacgagaatcactgtctgatatatctacaatagaactgtaaaataacaagttag |
2459905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 2460452 - 2460382
Alignment:
| Q |
9 |
ggtgttattttaattgtctttgactgagctactgtgtatgataccattaatagttgatggtggaattggga |
79 |
Q |
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| T |
2460452 |
ggtgttattttaattgtctttgactgagctactgtgtatgataccattaatagttgatggtggaattggga |
2460382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 135 - 458
Target Start/End: Complemental strand, 1010 - 687
Alignment:
| Q |
135 |
tgaaatatttgttcaactgcttctttcaactaagcatctctctttctctttctaccggccactggaatcaactatattatgtttatgggttgcctattcc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1010 |
tgaaatatttgttcaactgcttctttcaactaagcatctctctttctctttctaccggccactggaatcaactatattatgtttatgggttgcctattcc |
911 |
T |
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| Q |
235 |
ttaggacaaacagaaaaaacaaggacagggagtagcagtcacaaatatcaattagatccaaaccattcaatctatatacaatccatagtcaccccttcct |
334 |
Q |
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|| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
910 |
ttcggacaaacagaaaaaacaaggacagggagtagcatccacaaatatgaattagatccaaaccattcaatctatatacaatccatagtcactccttcct |
811 |
T |
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| Q |
335 |
ttcctagcagatctgtagattgctgccaactgtgcatatacattgaggaagacaaaagaccagtttaaaatacgagaatcactgtctgatatatctacaa |
434 |
Q |
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|||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
810 |
ttcctagcagatctttatattgctgccaattgtgcatatacattgaggaagataaaagaccagtttaaaatacgagaatcactgtctgatttatctacaa |
711 |
T |
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| Q |
435 |
tagaactgtaaaataacaagttag |
458 |
Q |
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| T |
710 |
tagaactgtaaaataacaagttag |
687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 1279 - 1233
Alignment:
| Q |
21 |
attgtctttgactgagctactgtgtatgataccattaatagttgatg |
67 |
Q |
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| T |
1279 |
attgtgtttgactgagctactgtgtatgataccattaatagttgatg |
1233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 147 - 458
Target Start/End: Original strand, 14960785 - 14961096
Alignment:
| Q |
147 |
tcaactgcttctttcaactaagcatctctctttctctttctaccggccactggaatcaactatattatgtttatgggttgcctattccttaggacaaaca |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960785 |
tcaactgcttctttcaactaagcatctctctttctccttctaccggccactggaatcaactatattatgtttatgggttgcctattccttaggacaaaca |
14960884 |
T |
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| Q |
247 |
gaaaaaacaaggacagggagtagcagtcacaaatatcaattagatccaaaccattcaatctatatacaatccatagtcaccccttcctttcctagcagat |
346 |
Q |
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||||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14960885 |
gaaaaaagaaggacagggagtagcatccagaaatatgaattagatccaaaccattcaatctatatacaatccatagtcactccttcctttcctagcagat |
14960984 |
T |
|
| Q |
347 |
ctgtagattgctgccaactgtgcatatacattgaggaagacaaaagaccagtttaaaatacgagaatcactgtctgatatatctacaatagaactgtaaa |
446 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960985 |
ctgtagattgctgccaattgtgcatatacattgaggaagataaaagaccagtttaaaatacgagaatcactgtctgatatatctacaatagaactgtaaa |
14961084 |
T |
|
| Q |
447 |
ataacaagttag |
458 |
Q |
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|||||||||||| |
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| T |
14961085 |
ataacaagttag |
14961096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 14960499 - 14960545
Alignment:
| Q |
21 |
attgtctttgactgagctactgtgtatgataccattaatagttgatg |
67 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14960499 |
attgtgtttgactgagctactgtgtatgataccatcaatagttgatg |
14960545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 134
Target Start/End: Complemental strand, 44247468 - 44247431
Alignment:
| Q |
97 |
atgaagaaagagcacctaaccttataaatcattttgta |
134 |
Q |
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|||||||||||||| |||||||||| |||||||||||| |
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| T |
44247468 |
atgaagaaagagcatctaaccttatcaatcattttgta |
44247431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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